Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o15
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    29   2.9  
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981...    29   5.0  
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243...    28   8.8  
04_04_1125 + 31085106-31085714                                         28   8.8  

>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/59 (25%), Positives = 34/59 (57%)
 Frame = +1

Query: 412 LAQTAISGGHHTDQNREVVLLINVERDLILEKEKAMTVIDIIELEAVLLQTVKNIHPVT 588
           +A + +   +    NRE VLL + +   +L  ++ +  I++++LE++L    +NI+ +T
Sbjct: 521 IALSLMRSSNEAKINREFVLLPHNKLVKLLTADRILREINLVKLESLLWHNDENINKIT 579


>04_03_0144 +
           11796550-11797178,11797808-11797902,11798053-11798102,
           11798382-11799293
          Length = 561

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 256 TEPTATPIPMIPHIINRKVRIHTTGSTLILEVILRGK 366
           +E  ATP P +P +  R+ R    G  L L++ LRG+
Sbjct: 109 SEEDATPRPSVPFVAVREEREEEEGRGLDLKLCLRGR 145


>08_02_1034 +
           23823194-23823307,23823399-23823620,23823984-23824309,
           23824648-23824777,23825145-23825441,23825550-23825815,
           23827835-23828333,23828902-23828993,23829571-23829735,
           23829817-23830204,23830275-23830393,23830494-23830524,
           23830675-23830880,23830970-23831014,23831120-23831201,
           23832210-23832398,23834499-23834602,23834669-23834759,
           23835097-23835225,23835425-23835556,23835779-23835949,
           23836143-23836171,23836214-23836301,23836313-23836391,
           23836666-23836844
          Length = 1390

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 583 VTGLAPALIRTLVINTEGTLNLVILPHLKDLTRKDHLKV 699
           + GL PA +   +++ +   ++ +LP L+D  R+++LK+
Sbjct: 176 LAGLPPAAVLCEIVDDDDG-SMALLPKLQDFARRENLKI 213


>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 223 PATHTTPLLMTTEPTATPIPMIP 291
           PAT TTP    T P ATP P  P
Sbjct: 53  PATPTTPPTPWTPPPATPTPPTP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,750
Number of Sequences: 37544
Number of extensions: 206078
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)