Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o14
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   241   5e-65
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   143   2e-35
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   142   4e-35
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   138   7e-34
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   3.3  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   4.4  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.8  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   5.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  241 bits (591), Expect = 5e-65
 Identities = 103/172 (59%), Positives = 131/172 (76%)
 Frame = +3

Query: 168 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLQLERINVYYNEASAGKYV 347
           MREI+++Q G CGNQ+G  FW  I+DEHG+D +G YHG S+ Q ER+NVY+NEA+ GKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 348 PRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYTEGVEILESALDVI 527
           PR VL+DL+P TMDAV+SG FG LFRPDN +YGQ+ A N WAKGHYTEG E+ ++ LDV+
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 528 RREAEGCDCLQGFQMSHXXXXXXXXXXXXXXVNRIREEYPDRIILTFSVFPS 683
           RREAE CD LQGFQ++H              +++IREEYPDR++ TFSV P+
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPA 172


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  143 bits (346), Expect = 2e-35
 Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
 Frame = +3

Query: 171 REIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLQLERINVYYNEASAGKYVP 350
           REII LQ G CGNQIG +FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 351 RTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQN--CAANNWAKGHYTEGVEILESALDV 524
           R +LIDL+P  ++ + S  +G L+ P+N +  +N   A NNWA G Y+    I E  +D+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 525 IRREAEGCDCLQGFQMSHXXXXXXXXXXXXXXVNRIREEYPDRIILTFSVFPS 683
           I REA+G D L+GF + H              + R+ + YP +II T+SVFP+
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPN 174


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  142 bits (344), Expect = 4e-35
 Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
 Frame = +3

Query: 168 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLQLER--INVYYNEASAGK 341
           MREII++ VG  G QIG   WE+   EHGI P+G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 342 YVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYTEGVEILESALD 521
           YVPR++ +DL+P  +D VR+GP+  LF P+  + G+  A+NN+A+GHYT G E+++   D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 522 VIRREAEGCDCLQGFQMSHXXXXXXXXXXXXXXVNRIREEYPDRIILTFSVFPS 683
            IRR A+ C  LQGF + H              + R+  EY  +  L FSV+P+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  138 bits (334), Expect = 7e-34
 Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 6/178 (3%)
 Frame = +3

Query: 168 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGC------YHGDSDLQLERINVYYNEA 329
           MRE+I++ VG  G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 330 SAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYTEGVEILE 509
             GK+VPR++ +DL+P  +D VR+GP+  LF P+  V G+  A+NN+A+GHYT G E+++
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 510 SALDVIRREAEGCDCLQGFQMSHXXXXXXXXXXXXXXVNRIREEYPDRIILTFSVFPS 683
           S L+ IRR A+ C  LQGF + H              + R+  EY  +  L FSV+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 471 AKGHYTEGVEILESALDVIRREAEGCDCLQ 560
           A+GH   GVE++ +  D +R+++E    L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 278 RRLRPATRKDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVG-TLRMPIQT 427
           R+ +P +R+D R+  + +G E C  H         D  G++   L++P +T
Sbjct: 219 RKNQPRSRRDPRLSWKALGGEYCHFHLYKENRDSMDCLGKIARLLKVPTRT 269


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 400 RDPSDAYSDRTISSTDKTVRPTTGRRD 480
           + P + +SD+TI S   T+ PT   ++
Sbjct: 702 KTPMNLFSDQTIGSITNTIEPTAAAKN 728


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 244 TSTASIQADATTATPTCN---SKGSTCTTT 324
           TST S+   +TTAT +C    S  ST TTT
Sbjct: 757 TSTGSVTTTSTTATASCTLPISYTSTPTTT 786


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 278 RRLRPATR-KDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVGTLR 412
           R  RP  + KD  + Q+GI     S  G+Y L  G D    V  LR
Sbjct: 283 RTKRPVMKIKDAHLPQQGISCLSFSQDGNYLLSRGEDNALRVWDLR 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,611
Number of Sequences: 5004
Number of extensions: 52610
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)