Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o12
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   266   2e-72
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.29 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    29   0.51 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.90 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.6  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    27   2.1  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    27   2.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   6.3  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   8.4  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  266 bits (652), Expect = 2e-72
 Identities = 120/177 (67%), Positives = 147/177 (83%)
 Frame = +3

Query: 198 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 377
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 378 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 557
           +F +   +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61  KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120

Query: 558 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 728
           + FRGLF+ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGS 177


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 668 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 540
           L Q Q L  +    ++ D DL PEV  ++ +EES  G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 114 GDEIRSLDLDKPEHLMPVMRPFSLSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKG 293
           G     +DLD PEHL P   P S    K   ++  P P   ++++  G     S   Y+ 
Sbjct: 150 GSSDHPIDLDNPEHLTP---PSSFITAKQLSRLPTPLPPPSSSSLPTGTISTNSFCPYER 206

Query: 294 K 296
           K
Sbjct: 207 K 207


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 177 FSLSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 350
           F+LS + +      P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 594 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEV 701
           +NL++I +  LPVG  +++   LR V     T K+G++
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDI 129


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 80  SHDDGTQVLLPRRRN*KPGPGQARAP---HACHETFLFEFQQDAS 205
           S +DGT + LP  R+  P P    A    H  H++ L EF + AS
Sbjct: 129 SKNDGTNLSLPPSRHQSPPPSSVLASQRHHRRHDSELEEFARRAS 173


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 724 PGLQLAGHTSPCLSVNWN 671
           P  +L  HT PC SV WN
Sbjct: 176 PKYRLTKHTQPCTSVCWN 193


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -3

Query: 409  PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 230
            P TS  +L +S+  + + +++   T + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = +3

Query: 201 PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 341
           P+ + KPA      +T  V     DI+L D  G           K +V+F YP   T  C
Sbjct: 30  PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89

Query: 342 PTEIIAFSEKADEFRKIGCEVLGASTDS 425
             +   F +   + +    EVLG S D+
Sbjct: 90  TKQGCGFRDNYPKIQASDYEVLGLSFDT 117


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 461 QAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 625
           +A R+  H H +   +   H  R  S   G  H    +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,890
Number of Sequences: 5004
Number of extensions: 49441
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)