Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o11
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    29   4.9  
02_04_0398 - 22598895-22599100,22599865-22599943                       28   8.6  

>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -2

Query: 631 HIIYLVWTNNLIVLNYFLNLVKHFIRKI*W*YNVTLMLGFGINKFSTKVQIKRYNKNTVL 452
           H++ L +   L+V +YF+ L + + +K  W Y +  +L +   +   KV+   Y  + V 
Sbjct: 478 HLLVLAYVL-LVVHSYFIFLTREWYKKTTWMYLIVPVLFYACERTIRKVRENNYRVSIVK 536

Query: 451 NLFFNINLWS 422
              +  N+ S
Sbjct: 537 AAIYPGNVLS 546


>02_04_0398 - 22598895-22599100,22599865-22599943
          Length = 94

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +1

Query: 277 GGSRESGCCSYVIHW-ECLSC 336
           GG    GCC +  HW ECL C
Sbjct: 73  GGHCRWGCCGHRNHWGECLRC 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,402,649
Number of Sequences: 37544
Number of extensions: 326088
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)