Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o11
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    29   2.5  
U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    28   7.8  

>AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical
           protein K06A5.8d protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 TRPKQHNRYIYCIKLNKN 157
           TRPKQH   +YC+  N N
Sbjct: 408 TRPKQHRGSVYCLSFNPN 425


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 TRPKQHNRYIYCIKLNKN 157
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 TRPKQHNRYIYCIKLNKN 157
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical
           protein B0496.5 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 646 EYTNKHIIYLVWTNNLIVLNYFLNLVKHFIR--KI*W*YN 533
           EY  KHI+ + W+  + V   FLN+V + IR  K  W YN
Sbjct: 171 EYYLKHILTVQWSPIICVGILFLNIVLYCIRQSKHKWSYN 210


>U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical
           protein F58G4.4 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = +1

Query: 241 MVINSTWIQDCWGGSRESGCCSYV-IHWECL------SCQYYCTS 354
           +++N  W+      S E+G   +  I +ECL       CQYYCTS
Sbjct: 104 LLVNDPWVHKTI--SNENGVSVFTSIRFECLPSFYGPKCQYYCTS 146


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 606 FVQTKYIICLLVYSQLEQPSKFPA 677
           F+ T Y+ICL+   ++E  +K PA
Sbjct: 60  FILTLYVICLIAIIKIEHMTKLPA 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,806,021
Number of Sequences: 27780
Number of extensions: 318311
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)