Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o08
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      134   6e-32
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                   130   8e-31
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      123   1e-28
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   2.6  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   3.4  
SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)                 29   4.5  
SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)                    29   4.5  
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   6.0  
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)                     28   6.0  
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   6.0  
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)                    28   6.0  
SB_37714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  134 bits (324), Expect = 6e-32
 Identities = 88/181 (48%), Positives = 106/181 (58%), Gaps = 1/181 (0%)
 Frame = +1

Query: 127 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS 306
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR  SLTD +
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMSLTDKT 127

Query: 307 KLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADI 486
             DSG EL IKI  +K    L + DTGIGMTK +L+ NL      GT A           
Sbjct: 128 AFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNL------GTIA----------- 170

Query: 487 SMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIV 663
                       S  +ADRV V SK+NDD+QY+WES A  SF++  D  G  L RGT I 
Sbjct: 171 -----------KSGTIADRVIVTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTIS 218

Query: 664 L 666
           L
Sbjct: 219 L 219


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score =  130 bits (315), Expect = 8e-31
 Identities = 73/193 (37%), Positives = 121/193 (62%), Gaps = 6/193 (3%)
 Frame = +1

Query: 106 AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 282
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+R
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102

Query: 283 YESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFME 462
           +  LT     ++   L I I  ++  GT TI D G+GMT+ +L+++LG IAKSG+K FME
Sbjct: 103 HFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFME 162

Query: 463 ALQAGADIS---MIGQFGVGFYSSYLVADRVTVHSK--HNDDEQYVWESSAGGSFTVRPD 627
            L+  A  S   +IGQFGVGFYS+++VAD+V V++K    + + Y W S   GS+     
Sbjct: 163 KLKNEARSSHENIIGQFGVGFYSTFMVADKVDVYTKSYQPNSQGYFWTSDGSGSYEYAEA 222

Query: 628 SGEPLGRGTKIVL 666
           +G  + RGTK+VL
Sbjct: 223 NG--VARGTKLVL 233


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  123 bits (297), Expect = 1e-28
 Identities = 55/66 (83%), Positives = 63/66 (95%)
 Frame = +1

Query: 469 QAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGR 648
           +AGADISMIGQFGVGFYS+YLVA++V V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGR
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGR 118

Query: 649 GTKIVL 666
           GTKIVL
Sbjct: 119 GTKIVL 124


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 147  RWLCLHFFRHFLYCFLFNSHKMTRGFLTHVFQSAKYRTLVSVLLSVQIT 1
            R +  H     + C LF SH +TR   +H       RTL S  LS  +T
Sbjct: 993  RVISSHTLSRHVTCTLFQSHPVTRTLSSHTLSRPVTRTLSSHTLSRHVT 1041


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +1

Query: 73  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 252
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 253 NSSDALDKI 279
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +1

Query: 304 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 474
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +3

Query: 327 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 494
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 495 WTVRCWLLLQ 524
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)
          Length = 365

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
 Frame = +1

Query: 244 LISNSSDALDKIRY--ESLTDPSKLDSGKELYIKI--IPNKNEGTLTIIDTGIGMTKADL 411
           LIS+S +  ++ R+  E +   S+L S + +Y +     N+N   L I+D+ I   +A+ 
Sbjct: 283 LISSSDEENNQERFKEEKIATSSQLSS-ERVYQRTQEANNQNNRLLGIVDSNILKARANA 341

Query: 412 VNNLGTIAKSGTKAFMEALQAGA 480
            N LG  A S +++  +  Q  A
Sbjct: 342 GNKLGKSAMSRSRSAAQRRQLAA 364


>SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 181 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS-KLDSGKELYIKIIPNKN 357
           AQ+  L+ ++ + N +    ++ +  S ALD++ YE   DP  K DS ++++I +  N+ 
Sbjct: 20  AQVCELLKDSQFLNMDATDAQIHTVVSGALDRLHYEK--DPCVKYDSNRKVWIYLHRNRT 77

Query: 358 E 360
           E
Sbjct: 78  E 78


>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
          Length = 433

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 573 VVIVFRVNS-HAVSDQVTGVEANTELSNHADVGTCLKSLHESFSTRFRDGSQIV 415
           +V+  + N+ H ++ QV     + + + H   G CLKSL   F  + RDG   V
Sbjct: 374 IVLSLKFNTGHEMNVQVQSKLYSVKDNTHVTWGACLKSL--DFECKMRDGQSFV 425


>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 289

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 168 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 34
           ERE  +L W C HF  + L     L   HK     LTHVF +A  ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158


>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 168 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 34
           ERE  +L W C HF  + L     L   HK     LTHVF +A  ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158


>SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 262 DALDKIRYESLTDPSKLDSGKELYIKIIPNKNE 360
           DAL K+R +   +PS +D G E+ ++    +N+
Sbjct: 32  DALSKLRQKEYAEPSGIDEGDEVLLRQTRRENK 64


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 168 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 34
           ERE  +L W C HF  + L     L   HK     LTHVF +A  ++
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 521


>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
          Length = 306

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 168 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 34
           ERE  +L W C HF  + L     L   HK     LTHVF +A  ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158


>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 168 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 34
           ERE  +L W C HF  + L     L   HK     LTHVF +A  ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158


>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 246

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 168 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 34
           ERE  +L W C HF  + L     L   HK     LTHVF +A  ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158


>SB_37714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 644 PRGSPLSGRTVNEPPAEDSHTYCSSSLCLE*TVTRSATK 528
           PRG    GR V   P +D HT  +   C + T  R  TK
Sbjct: 358 PRGRWPLGRIVETYPGQDGHTRVAKVQCGDKTYIRPITK 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,305,915
Number of Sequences: 59808
Number of extensions: 461674
Number of successful extensions: 1399
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)