Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25o07
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 221 9e-59
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 173 2e-44
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 69 6e-13
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 44 1e-05
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 42 1e-04
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 33 0.036
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 33 0.048
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 32 0.083
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 30 0.25
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.0
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 28 1.4
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 1.8
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 2.4
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 27 3.1
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 4.1
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 4.1
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 26 4.1
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 7.2
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 7.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 7.2
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.2
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 7.2
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 25 7.2
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 25 9.5
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 221 bits (539), Expect = 9e-59
Identities = 105/164 (64%), Positives = 125/164 (76%)
Frame = +1
Query: 160 MSTILEKIAAIESEMARTQKNKATALHLGIXXXXXXXXXXELITPKXXXXXXXXXFDVAK 339
M+T +KI +E EMA+TQKNKATA HLG+ ELITP FDVA+
Sbjct: 1 MATTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVAR 60
Query: 340 TGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 519
TG +GF+GFPSVGKSTL++ L G SE AAYEFTTLTTVPG ++Y GAKIQ+LDLPGI
Sbjct: 61 TGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGI 120
Query: 520 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLQHKKLLEHEL 651
IEGAKDG+GRG+QVI VARTC+LIFIVLDVLKP+ HK+++E EL
Sbjct: 121 IEGAKDGRGRGKQVITVARTCNLIFIVLDVLKPMSHKRIIEEEL 164
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 173 bits (421), Expect = 2e-44
Identities = 85/161 (52%), Positives = 108/161 (67%)
Frame = +1
Query: 169 ILEKIAAIESEMARTQKNKATALHLGIXXXXXXXXXXELITPKXXXXXXXXXFDVAKTGD 348
+LEKI IE+EM RTQKNKAT HLG+ +L+ P FDV K+GD
Sbjct: 3 VLEKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGD 62
Query: 349 ARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 528
AR+ F+GFPSVGKSTLLS + S A+YEFTTLT +PG ++Y GA+IQ+LDLPGIIEG
Sbjct: 63 ARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEG 122
Query: 529 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLQHKKLLEHEL 651
A G+G GRQ ++ ART LI +VLD K ++ +E+EL
Sbjct: 123 ASQGRG-GRQAVSAARTADLILMVLDATKAADQREKIEYEL 162
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 68.9 bits (161), Expect = 6e-13
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Frame = +1
Query: 355 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIK------YKGAKIQLLDLPG 516
IG VG P+ GKSTLL+ L S+V YEFTT+ G IK + + +L D+PG
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPG 298
Query: 517 IIEGAKDGKGRGRQVIAVARTCSLIFIVLDV 609
II+GA DGKG G + ++ +V+D+
Sbjct: 299 IIKGASDGKGLGYDFLRHVERAKMLCLVIDI 329
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +1
Query: 367 GFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 525
G+P+VGKS+ ++ + +V Y FTT + G YK + Q++D PGI++
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGILD 227
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 41.5 bits (93), Expect = 1e-04
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 26/114 (22%)
Frame = +1
Query: 346 DARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTL---------TTVPGCIK------- 477
D IGFVG PS GKST+L+ L ++ + FTT+ C +
Sbjct: 4 DILIGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKC 63
Query: 478 ---YKGAK-------IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDV 609
Y G K IQLLD+ G+I GA GKG G + + R + V+DV
Sbjct: 64 KPIYGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDV 117
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 33.1 bits (72), Expect = 0.036
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +1
Query: 355 IGFVGFPSVGKSTLLSNLA-----GVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 519
+G +G+P+VGKS++++ L G + A +TT +K K++L+D PGI
Sbjct: 272 VGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSLREVKLDN-KLRLVDSPGI 330
Query: 520 IEGAKDGK 543
+ + D K
Sbjct: 331 VFPSSDSK 338
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 32.7 bits (71), Expect = 0.048
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Frame = +1
Query: 352 RIGFVGFPSVGKSTLLSNLA-GVYSEVAAYEFTTL------TTVPG------CIKYK--- 483
+ G VG P+VGKST + V A Y + T+ VP C YK
Sbjct: 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 484 --GAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL 603
A + + D+ G+ +GA G G G ++ R I+ V+
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 31.9 bits (69), Expect = 0.083
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 358 GFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 522
G VG+P+VGKS+ ++ L G S+ + T T K+ LLD PG++
Sbjct: 305 GLVGYPNVGKSSTINALVG--SKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLV 357
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 352 RIGFVGFPSVGKSTLLSNLAGV-YSEVAAYEFTTLTTV 462
+IG VG P++GKSTL L A Y F T+ V
Sbjct: 47 KIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPV 84
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 355 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 534
+ +G P GKSTL+ +L YS+ + T TV + K +I L+ P +
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITV---VAGKKRRITFLECPNDLSSMI 133
Query: 535 D 537
D
Sbjct: 134 D 134
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 355 IGFVGFPSVGKSTLLSNLAGV-YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 531
+ +G S GKSTLL+NL G +S + A + T K + I ++D+ G
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTTKGIWLSKANNSPILVMDVEG----- 96
Query: 532 KDGKGRG 552
DG+ RG
Sbjct: 97 TDGRERG 103
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +1
Query: 343 GDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIK--------YKGAKIQ 498
G + FVG P+ GKS++L++L V + + + PG K + +
Sbjct: 144 GRVYVYFVGMPNTGKSSILNSLRNV--ALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVY 201
Query: 499 LLDLPGII 522
+LD PGI+
Sbjct: 202 MLDTPGIM 209
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 355 IGFVGFPSVGKSTLLSNL 408
+G +GFP+ GKS++++ L
Sbjct: 313 VGLIGFPNAGKSSIINTL 330
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 611 STSSTINIRLHVLATAITCRPLPLPSFAPSIIPGRSSSCIL 489
S SS N +L L T + PLP P+ + S +P S+C L
Sbjct: 460 SASSVFNSQLQPLQTDLLS-PLPSPTSSNSRLPRVRSACTL 499
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 346 DARIGFVGFPSVGKSTLLSNLAGV 417
D+R+ VG GKSTLL+ + G+
Sbjct: 416 DSRVAIVGKNGTGKSTLLNLITGL 439
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 162 VYNIGKNCRYRVGDGAHTKKQSYCASF 242
++NI NC+Y + DG H+ S C F
Sbjct: 131 IWNIIGNCKYTITDGGHSDWVS-CVRF 156
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 633 FLVLQWLQYIKYYKYKTACSSHSYY 559
F++ L YIK ++Y+ C S S Y
Sbjct: 82 FVICDALNYIKGFRYQLYCESKSMY 106
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 331 VAKTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 495
+++ IG +G + GKST++ ++GV++ E T+ + Y AKI
Sbjct: 18 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIK--LGYANAKI 70
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 77 RNYMKIVNEKRVNLDLAIR 21
R Y+ +VN K ++LD+A+R
Sbjct: 310 RKYLSVVNFKCISLDMALR 328
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 328 DVAKTGDARIGFVGFPSVGKSTLLSNL 408
D+ D+RIG VG GKST+L L
Sbjct: 538 DIDVQMDSRIGVVGPNGAGKSTMLKLL 564
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 180 FFQYCRHFRCFLCLIS*INISNGCYSR*INK*CIQKLY 67
F +C H C+ CL++ + S C + C QKLY
Sbjct: 96 FTTHCGHTYCYECLLNWLKESKSCPT------CRQKLY 127
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 548 LPLPSFAPSIIPGRSSSCILAPLYLMQPGTVVSVVNSYAATSEYTPAKLESKV 390
+P + A S++P ++++ + L L P T S ++ S Y P K +S V
Sbjct: 663 IPPVTQASSLVPSKNNTASSSSLMLDSPVTPSSPYSTSQGYSFYRPPKPKSSV 715
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +3
Query: 15 LYTNRQIEINTLFIYNFHIISVYITYLFIYCNIHYLYLFKKLDTKNSENVYNIGKNCRY 191
L + QI F +IS +T + + LFK LD E VY+ N R+
Sbjct: 374 LCSKLQIFPKPFLALKFALISASLTSKKPFQKTDAVNLFKHLDANKVEQVYDFFHNARW 432
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 15 LYTNRQIEINTLFIYNFHIISVYITYLFIYCNIHYL 122
L+ R IN++ Y+ IIS +L CN HY+
Sbjct: 96 LFFKRFYLINSVMEYSPKIISFTSLFLATKCNDHYI 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,265
Number of Sequences: 5004
Number of extensions: 53923
Number of successful extensions: 194
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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