Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o06
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.4  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    26   4.2  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    26   5.5  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    26   5.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.3  

>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 79  LWLVTDWNFTLITKIYWYF 23
           LW++ D    L+  +YWYF
Sbjct: 76  LWILADPAILLVQSVYWYF 94


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 506 ESLTSLPSTVLPITVTVQIDGY 441
           +SL    + VLPI  TV++DGY
Sbjct: 64  DSLKEAYNLVLPIVETVEVDGY 85


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 115 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 261
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 115 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 261
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 621  ISGVTI*NFQHLLPC-LDGQFS-GIRYS 544
            I GV+    QH LPC LD  FS  +RYS
Sbjct: 1292 IEGVSASLMQHFLPCILDSCFSKNLRYS 1319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,146
Number of Sequences: 5004
Number of extensions: 58651
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)