Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o06
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1099 - 8700627-8700710,8701148-8701200,8701287-8701344,870...    33   0.26 
08_01_0239 - 1993833-1994114,1994266-1994436,1994541-1994686,199...    31   1.1  
04_03_0624 - 18115559-18115725,18115993-18116872                       28   5.7  
01_06_1753 - 39664219-39665445                                         28   5.7  

>01_01_1099 -
           8700627-8700710,8701148-8701200,8701287-8701344,
           8701886-8702032,8702386-8702448,8702559-8702630,
           8703154-8703234,8703312-8703362,8703519-8703615,
           8704154-8704384,8704882-8705142,8705231-8705394,
           8705547-8705586,8707223-8707323
          Length = 500

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = -3

Query: 163 CLSSLQISFDLLLSILPPI----FEISRPYVPLWLVTDWN--FTLITKIY 32
           CL +LQIS DLL  IL PI     ++ R  + L L T W+  +T I  IY
Sbjct: 148 CLVALQISIDLLCPILMPIDLSLIDVPRLPINLLLTTVWDYRYTSIGSIY 197


>08_01_0239 -
           1993833-1994114,1994266-1994436,1994541-1994686,
           1995127-1995182,1995314-1995437,1995527-1995712,
           1995787-1995845,1996413-1996630,1996853-1996966,
           1997339-1997466,1997591-1997650,1998225-1998386,
           1998796-1998883
          Length = 597

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 94  ARFQIWEVKCLKEGQRIFVKSLDTKGAINV 183
           ARFQ + + C  +GQR+    LDT G  N+
Sbjct: 327 ARFQKYIIFCDADGQRVLKHDLDTNGTSNI 356


>04_03_0624 - 18115559-18115725,18115993-18116872
          Length = 348

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 147 CKELRHQGRYQRMQRTSQC-NGCDSGGYPYNASR 245
           C+E RHQ  Y  +   S C N  +  GY  N S+
Sbjct: 243 CEEARHQANYSCISTYSDCFNSLNGPGYICNCSK 276


>01_06_1753 - 39664219-39665445
          Length = 408

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 156 LRHQGRYQRMQRTSQCNGCDSGGYPYN 236
           ++    Y++ Q     NGC +GGY YN
Sbjct: 220 VKQHATYKQHQAIEGVNGCGAGGYNYN 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,151,722
Number of Sequences: 37544
Number of extensions: 354248
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)