Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o05
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061...    60   2e-09
07_01_0744 + 5687269-5687365,5687466-5687689,5688307-5688354,568...    48   8e-06
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895...    39   0.005
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253...    33   0.31 
11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120     29   5.0  
03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080     28   8.8  

>03_06_0379 +
           33505242-33505347,33505474-33505631,33506127-33506174,
           33506851-33506919
          Length = 126

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
 Frame = +1

Query: 256 SGFNKYGLLRDDCL---HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 426
           S   KYGL  DD     H+  D+ EAL RLP  VVD R+ R+ RA+ LSM+   L + + 
Sbjct: 30  SRLRKYGLRYDDLYDPKHDL-DIKEALERLPREVVDARHQRLKRAMDLSMKHQYLSENDQ 88

Query: 427 TKYEEDSLYLTPIVEQVEKERLEREQ 504
            +      YL+ +++ V+KERLERE+
Sbjct: 89  AQQTPFRGYLSDMMDLVKKERLEREE 114


>07_01_0744 +
           5687269-5687365,5687466-5687689,5688307-5688354,
           5689057-5689125
          Length = 145

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +1

Query: 256 SGFNKYGLLRDDCL--HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 420
           S   KYGL  DD    +   D+ EAL RLP  VVD RN R+ RA+ LSM+   LP +
Sbjct: 27  SRLRKYGLRYDDLYDPYHDLDIKEALARLPREVVDARNQRLKRAMDLSMKHQYLPAD 83


>08_01_0907 +
           8949102-8949160,8949662-8949842,8951816-8951941,
           8952082-8952092,8952237-8952360,8952447-8952546,
           8952807-8952849,8953033-8953153
          Length = 254

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = +1

Query: 268 KYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 423
           +Y  L D   +   D+ EAL RLP  VVD  N R+ R + LS +   LP +E
Sbjct: 28  RYDDLFDAYQYHGLDIKEALARLPREVVDAHNQRLKRTMDLSTKHQYLPADE 79


>06_03_0540 -
           21923763-21923945,21924027-21924776,21924895-21925323,
           21925509-21925619,21925715-21926040,21926130-21926251,
           21926905-21927020,21927119-21927243,21927338-21927596
          Length = 806

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 268 KYGLLRDDCLHETPDVTEALRR---LPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYE 438
           K  +L  +C  E   V +AL R   L   V DE+   +    ++ M KT+  +E ++K++
Sbjct: 353 KIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHK 412

Query: 439 EDSLYLTPIVEQVE 480
            + +    I E+ +
Sbjct: 413 AEIVADMVIAEKTK 426


>11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120
          Length = 361

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 349 VDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 513
           +D  +F +V    L+ +K  L KEEW + + +         + +KE  ERE+ EK
Sbjct: 216 IDIYSFGVVMLEVLTGKKPYLFKEEWKEEKREKCEQDGKNTEEDKEESEREEEEK 270


>03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080
          Length = 148

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 SGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAI-QLSMQKTILPKEE 423
           SG++K G+     +H TP   EAL R+ +     R  R  + + +LS+   I PK++
Sbjct: 46  SGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQK 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,636
Number of Sequences: 37544
Number of extensions: 313192
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)