Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25o04
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 29 0.62
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 27 2.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 4.4
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 5.8
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 5.8
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 7.6
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.6
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 7.6
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 29.1 bits (62), Expect = 0.62
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 511 WANAALWPEPSVWAVYPLWSVLLTRW 588
W + +P PS W P ++++L +W
Sbjct: 50 WNSHEYFPSPSNWRALPFYTIILDKW 75
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -3
Query: 572 TLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVRIETDRVHKAHS 423
T+ T+HTE S +A +T T +++ + HK+HS
Sbjct: 739 TIVEATTSHTESSNSKAPAIEETTTTKVEVVAAHDAVSISSNSSTHKSHS 788
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 407 TGMVHSTGNISACKARMVQNTVRTVHMGR-YKDRKAHMGHSWAR 279
T +H G+ CK +V+N + R + R AH+G+ R
Sbjct: 91 TRSLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIR 134
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -3
Query: 122 LENQKN*SLDNLE*LFFEIFVINIILYFFKTVLDNFFYKK 3
+EN + S+D ++ + F+I V N LY F L++ FYK+
Sbjct: 740 MENVEEESIDKIKDILFDIHVDN--LYLFPQ-LEHSFYKR 776
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -3
Query: 656 LTPKPTLSQC-----IFGNVH*CTYTIFHLVSKTLHRGYTAHTEGSGHRAALAHKTGT 498
+TP +L+QC ++ + + + V+KT H YT T+GS + KT T
Sbjct: 41 VTPNTSLAQCPKYVTVYSSGSSHYISTIYPVNKTHHTEYTTLTDGSIDTYTITAKTDT 98
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = +1
Query: 421 ILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANAALWPEPSVWAV 555
+L WT M T P P+ V W+ P S W V
Sbjct: 119 VLHQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVSLPSSSPWGV 163
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -3
Query: 587 HLVSKTLHRGYTAHTEGSGHRAALAHKTGTNQMKDMG----RRGRTVRIETDRVHKAHSM 420
H+ S + HR + + +++L + + K + R GR+ + D++ +
Sbjct: 110 HVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRSSKEPLDQIDRLDVT 169
Query: 419 ACKTTGMVHSTGNISACKARMVQNT 345
+G H G AC+ +N+
Sbjct: 170 GLYGSGSFHHDGPFDACRPHRNRNS 194
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 668 FY*TLTPKPTLSQCIF 621
F+ L PKPT+S C+F
Sbjct: 263 FFLNLVPKPTVSFCVF 278
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 339 ADRVLDHARLACRNVPRAVDHARRFASHTVGLVDPVRLDADRAAPAAHVLHLVRASLVGQ 518
A +V+D A +PR V + VG+ DP R ++ A H + L G
Sbjct: 564 ATKVIDKAD-NWETLPRDVAESSLEFVSLVGIYDPPRTESKGAVELCHRAGIRVHMLTGD 622
Query: 519 CRPVARAL--RMGSVPP 563
A+A+ +G +PP
Sbjct: 623 HPETAKAIAREVGIIPP 639
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,046
Number of Sequences: 5004
Number of extensions: 34158
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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