Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o02
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    30   0.28 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.50 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.5  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    27   3.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   6.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.1  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   8.1  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   8.1  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 400 SRDRPMPTQHLEDSVEDRVKQMEARIMALVEESCLLSAR 516
           S +  + +  +ED +E R+ ++EAR+  LVE S LL AR
Sbjct: 62  SYESVLESSTIEDIIE-RITRLEARVRQLVESSQLLEAR 99


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +1

Query: 196 PALDTRNLREDETFQETLRTAGIGRKLPSRTGTGMVRLGTVSMRDVGSRSGTSAR 360
           P  D     EDE  + TLRTA  G + P++      +  TV+  +VGS++GT+ R
Sbjct: 271 PNADLIISEEDELTEMTLRTAN-GSE-PTKKSNRSEQSKTVANTNVGSKNGTTPR 323


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 573  KCLAQVMFFSSSTIIIRIWSGAQ*TRLLHQCHDSCFH 463
            K L +   F S  +  R W+    T+LL +  DSC++
Sbjct: 2206 KALTKESLFGSMNMDTREWTDGVFTKLLRKTRDSCYY 2242


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 371 HCALLGTPRRHAIDPCPLNIWKTASKIALSKWKHES 478
           HC+  GTP      P  L IW  A K     W +++
Sbjct: 339 HCSECGTPLYSDPSPEELGIWLHALKYESKDWSYKT 374


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 385 GYTSASRDRPMPTQHLEDSV 444
           GYTSAS DRP+     E SV
Sbjct: 480 GYTSASPDRPLSQTITESSV 499


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 1/114 (0%)
 Frame = +1

Query: 106 ASRLGTDAKPRTAIIVDEDDELYSGFNEVAPALDTRNLREDETFQETLRTAGIGRKLPSR 285
           A  L  +   +  +  D+   +  GF+   P L T+N+  +E               P+ 
Sbjct: 289 AKELEKEKLSKVTVTPDDSTSIIRGFDPRLPVLSTKNVSHEEKSHSVQDDKSKQLLKPNP 348

Query: 286 TGTGMVRLGTVSMRDVGSRSGTSAR-PVTALRAAGYTSASRDRPMPTQHLEDSV 444
           T       G+       S S  SA     ++ +A +   +   P+PT  + +S+
Sbjct: 349 TQPYFYLRGSFDTGHSASSSICSAAVDSESVNSADFPHRTVYDPLPTHAIAESI 402


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 621 HANKLSFHRGRLLSLCKCLAQVMFFSSSTIIIRIWS 514
           HAN+++    R+ SL  CLA V     +  +++IWS
Sbjct: 464 HANRVA-KAMRVGSLIACLAYVCDSRDADCVVKIWS 498


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 343 SGTSARPVTA-LRAAGYTSASRDRPMPTQHLEDSVEDRVKQMEARIMALVEESCL 504
           SG    P T  LR      A+  R   ++ +E ++ED  +Q+E   +A + E+C+
Sbjct: 34  SGRRHYPATGPLRLPFQRPATSCRTFHSKSVEQTIEDVKEQLEDEDLARLFENCM 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,948
Number of Sequences: 5004
Number of extensions: 70197
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)