Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n23
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   3.1  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    23   7.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    23   7.2  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 106 ILFVSTAFHCCWLRGNYRILFLR*LIHVVNGYHA 5
           +L +   FH  +L+  + I F+  LIH +  Y A
Sbjct: 5   LLLLGILFHVVFLKSIFDIYFVTPLIHGMKQYSA 38


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 11  ITIYYMNKLSQKKY 52
           IT+ YMN+LS + Y
Sbjct: 140 ITVVYMNELSNESY 153


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 90   VDTNKIILHYITSYEAIN 143
            +D ++ +LH I +YE++N
Sbjct: 1164 IDADESVLHDIPAYESLN 1181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,478
Number of Sequences: 5004
Number of extensions: 8596
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)