Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n23
         (161 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    25   9.6  
L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promot...    25   9.6  
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    25   9.6  

>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 95  VDGFSLLLVEGQLPHTFFAITYSCSKWLS 9
           V G+ ++ V GQL   F++IT   S WL+
Sbjct: 86  VYGWIIVDVPGQLMALFYSITRKYSVWLA 114


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  KAVDTNKIILHYITSYE 134
           K VD N  +L YITSYE
Sbjct: 377 KIVDENMKLLPYITSYE 393


>L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promoting
           complex; seealso mat protein 2 protein.
          Length = 728

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   CVITIYYMNKLSQKKYAVVAPQP 73
           C+I+ +Y  KL  +K   + PQP
Sbjct: 492 CIISSHYWPKLETEKTEALMPQP 514


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  KAVDTNKIILHYITSYE 134
           K VD N  +L YITSYE
Sbjct: 377 KIVDENMKLLPYITSYE 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,256
Number of Sequences: 27780
Number of extensions: 49232
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)