Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n23
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    18   9.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    18   9.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    18   9.8  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 71  VEGQLPHTFFAIT 33
           +EG+L  TF+ +T
Sbjct: 142 LEGELKGTFYPLT 154


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 62   APQPAAVKSRRHK*NNITLHYILRSNK 142
            +P+P     R H  NN + +    SN+
Sbjct: 1856 SPEPPPPPPRNHDQNNSSFNDSKESNE 1882


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 106 ILFVSTAFHCC 74
           I+FV + F CC
Sbjct: 61  IIFVISFFGCC 71


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 71  VEGQLPHTFFAIT 33
           +EG+L  TF+ +T
Sbjct: 158 LEGELKGTFYPLT 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,151
Number of Sequences: 438
Number of extensions: 763
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)