Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25n19
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 52 9e-08
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 49 6e-07
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 45 1e-05
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 43 6e-05
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 43 6e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 42 7e-05
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 31 0.14
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 30 0.32
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 29 0.98
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 27 3.0
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 3.9
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 26 5.2
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 26 6.9
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 9.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 9.1
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 52.0 bits (119), Expect = 9e-08
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Frame = +3
Query: 39 KCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEGIRRLVDINVT-ALVMSTLK 215
K DVS + G + IDV++NNA ++L G +++D+N+ A+ M T
Sbjct: 63 KLDVSDLKSIPGVIESLPKEFADIDVLINNAGLAL-----GTDKVIDLNIDDAVTMITTN 117
Query: 216 AIEIMRVDK-------TGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQE 374
+ +M + + + G I+N+ SIA + + VYC TKSA+ QF++ + K+
Sbjct: 118 VLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESYVGGS-VYCSTKSALAQFTSALRKET 176
Query: 375 YFSKTGVRVITVCYGPTDTD 434
T +R++ V G +T+
Sbjct: 177 I--DTRIRIMEVDPGLVETE 194
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 49.2 bits (112), Expect = 6e-07
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Frame = +3
Query: 9 TYGDGKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSL-----ENSLEGIRRL 173
T K+ K DV+ + AF G +D+V+NNA L ++E + R
Sbjct: 43 TIEHSKLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQ 102
Query: 174 VDINVTALVMSTLKAIEIMRVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQFS 353
+++N + T +A+ +MR ++GKGG I+ ISS+A P + +Y +K AV S
Sbjct: 103 MNVNFWGVAYITKEALNLMR--ESGKGGRILQISSVAGYYP-SPCLSMYNASKFAVEGLS 159
Query: 354 NCIGKQ 371
I ++
Sbjct: 160 QTIMRE 165
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +3
Query: 39 KCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEGI-RRLVDINVTALVMST-- 209
+ DVS DQ+ A KV+ + G IDV++NNA ++ + E + D +V+ ++
Sbjct: 51 QADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYL 110
Query: 210 LKAIEIMRVDKTGKGGTIINISSI 281
+ I + K GKGG+I+NI S+
Sbjct: 111 TQRYVIPHMAKQGKGGSIVNIGSV 134
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 42.7 bits (96), Expect = 6e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +3
Query: 45 DVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEGIRRLVDINV-TALVMSTLKAI 221
DV+ + + K + G IDV++NNA S+ + LE N+ V L+ I
Sbjct: 22 DVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVI 81
Query: 222 E-IMRVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVR 398
+ I + ++ G IIN+SSI F P +Y GTK A+ S + + GV+
Sbjct: 82 KAITPIFRSQHNGMIINVSSIGGKMTF-PLGCLYYGTKYAIEGISEALTWE--MQSIGVK 138
Query: 399 VITVCYGPTDTD 434
V + G T T+
Sbjct: 139 VKIIEPGFTATE 150
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 42.7 bits (96), Expect = 6e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +3
Query: 45 DVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEGIRRLVDINV-TALVMSTLKAI 221
DV+ + + K + G IDV++NNA S+ + LE N+ V L+ I
Sbjct: 22 DVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVI 81
Query: 222 E-IMRVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVR 398
+ I + ++ G IIN+SSI F P +Y GTK A+ S + + GV+
Sbjct: 82 KAITPIFRSQHNGMIINVSSIGGKMTF-PLGCLYYGTKYAIEGISEALTWE--MQSIGVK 138
Query: 399 VITVCYGPTDTD 434
V + G T T+
Sbjct: 139 VKIIEPGFTATE 150
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 42.3 bits (95), Expect = 7e-05
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = +3
Query: 102 GYIDVVVNNAAVS-LENSLEGIR-RLVDINVTALVMSTLKAIEIMRVDKTGKGGTIINIS 275
G+IDV+VNN A + S+E I D+ + S + + G +I+N S
Sbjct: 120 GWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAA-ISHMKSGSSIVNCS 178
Query: 276 SIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLV 440
SI A P + Y TK A+ F+ + Q +++ G+RV V GP T LV
Sbjct: 179 SINAYVGR-PDLLDYTSTKGAITAFTRGLSNQ--YAQHGIRVNAVAPGPIYTPLV 230
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 31.5 bits (68), Expect = 0.14
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 4/151 (2%)
Frame = +3
Query: 117 VVNNAAVSLENSLEGIRRLVDINVTALVMSTLKAIEIMRVDKTGKGGTIINISSIAAL-- 290
VV + A + N I V+++ TA ++ + + + T G + N + + +
Sbjct: 73 VVIHTASPVHNLARDIYFEVNVDGTANIIKACQKFNVDALVYTSSAGVVFNGADLINVDE 132
Query: 291 KQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLVPLMINI--DD 464
Q P V + +S L + KT + +GP D LVP M+++ +
Sbjct: 133 SQPIPEVHMDAYNESKALAEKQVLEASSESLKTAALRVAGLFGPGDRQLVPGMLSVLKNG 192
Query: 465 SINPEIRSNIDAQKLQTAESAARGLLEAYKN 557
++ N++ E+AA L A N
Sbjct: 193 QTKFQLGDNLNLFDFTYIENAAYAHLLAMDN 223
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 30.3 bits (65), Expect = 0.32
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 225 IMRVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVI 404
I +D + GT+ S+ +K + + VY G+ + +C+ Q+ F TG
Sbjct: 335 ITSLDFSHPFGTLATASTDKTVKVWDMAGVVYLGSLKGHSDYVSCLAIQDSFIATGSMDT 394
Query: 405 TVCYGPTDTDLVPLMINIDDSINPEIRSNID-AQKLQTAESA 527
TV D D++ +++S+N +D A + T+ +A
Sbjct: 395 TVRLWNLDNDVLHKDNPVEESLNSPPDQPVDNATNVLTSHTA 436
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.98
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Frame = +3
Query: 27 VKFY--KCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAV-----SLENSLEGIRRLVDIN 185
VK Y KCDV+I ++ AF ++ ID+VV N + +++ + E +++N
Sbjct: 70 VKTYTCKCDVTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEINVN 129
Query: 186 VTALVMSTLKAIEIMRVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQ 347
+ + A I + K G G + S + Y +K+ V+Q
Sbjct: 130 LLGVFNVAHNAGPIFQ--KQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQ 181
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 468 INPEIRSNIDAQKLQTAESAARGLLEAYKN--GASGSTWLVFD 590
+NP+ S AQ LQ SAA GL + K+ G +G+T ++ D
Sbjct: 5 LNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVD 47
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 231 RVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQ-FSNCIGKQEYFSKTGVRVIT 407
++DK +G I NISS+ + F S F + +L F + F VRV
Sbjct: 746 KIDKDDEGFAITNISSVHKMPSFVLSYFSDLAASNRILTGFDRVLQLLPSFYDIPVRVRN 805
Query: 408 VCY 416
V Y
Sbjct: 806 VQY 808
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 5.2
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = +3
Query: 399 VITVCYGPTDTDLVPLMINIDDSINPEIRSNIDAQKLQTAESAARGLLEAYKNGASGSTW 578
+I +G LVPLMI D P + +N L A L+ A G W
Sbjct: 77 IIPALFGAFGNYLVPLMIGAPDVAYPRV-NNFTFWLLPPALMLL--LISALTEEGPGGGW 133
Query: 579 LVFDSKVTEITSNIDRAYDI 638
V+ ++ ITS+ A D+
Sbjct: 134 TVY-PPLSSITSHSGPAIDL 152
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 42 CDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAV 137
CD+SI L FNKV D Y ++ NNA V
Sbjct: 311 CDLSIFLSLLPIFNKVQDRMRY-SLLTNNAIV 341
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 360 IGKQEYFSKTGVRVITVCY 416
+G E++ + VRVI VCY
Sbjct: 90 VGMNEFYYQVAVRVIEVCY 108
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 327 TKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLVPLMINIDDSI 470
T+ Q N + K F +R I V +DT PL++++ D +
Sbjct: 97 TRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIV 144
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 573 TWLVFDSKVTEITSNIDRAYDIMSENFTK*FRVL 674
TW++ ++ + SN +Y++ N+T R+L
Sbjct: 190 TWMITENLINSEPSNSSFSYEVQPSNYTTFCRML 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,488
Number of Sequences: 5004
Number of extensions: 62020
Number of successful extensions: 196
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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