Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n15
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   1.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   1.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   1.8  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    24   4.1  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    24   4.1  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    23   5.5  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    23   5.5  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    23   7.2  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    23   7.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    23   7.2  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    23   7.2  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        23   9.6  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    23   9.6  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 62  SSFAAMQLELKC--CGVNSNLDWYKHRS-SYPPAC 157
           S +A   + ++C  CG+  NLD+ KH S    PAC
Sbjct: 796 SGYALGDVHVQCDNCGLRVNLDFIKHISMPCVPAC 830


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 108  ILTWIGISTEARILRRAADVLLMKSAGKGVIFPCTRRVACV 230
            +L W G S    IL   +++L + S  +    P  RRVA V
Sbjct: 1779 VLLWCGSSNNIEILDDESNLLRLMSLVEKYSLPFLRRVALV 1819


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 140  SFGAYTNPS*NSLRSTSTRVAWQRKSFGPQDRWHPAS 30
            SFGA  +P   S+  TST       +FG Q   +PA+
Sbjct: 999  SFGANNSPQPASMFGTSTPAPSSAFAFGNQSGTNPAA 1035


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 164 RASNEKRGERCDFPLYPTGCLRPA 235
           RA  +K  ER  FP+ P G  R A
Sbjct: 44  RAFKDKEFERLGFPMVPEGSWRHA 67


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 13  EHGAGDDAGCHRSCGPKLFRCHATRVEVLRS 105
           ++G+G DAG + S G K F    T  E L +
Sbjct: 59  DNGSGIDAGDYESIGKKHFTSKITDFEDLEA 89


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 110 NSLRSTSTRVAWQRKSFGPQDRWHP 36
           N  R++S   ++  KSF P +R HP
Sbjct: 302 NHSRNSSKDASFMMKSFIPSNRSHP 326


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 203 ENHTFPRAFH 174
           ENH FPR FH
Sbjct: 305 ENHDFPRFFH 314


>SPCC16A11.01 ||SPCC63.15|conserved fungal
          protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 53 QDRWHPASSPAPCSRSE 3
          QD+WH  S P P   S+
Sbjct: 47 QDKWHTPSEPDPVYLSD 63


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 89  LKCCGVNSNLDWYKHRS 139
           L C G+N N+  YKH S
Sbjct: 523 LACGGLNGNVHIYKHLS 539


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 50  PAVRSSFAAMQLELKC-CGVNSNLDWYKHRSSYPPACCGRASNEKRGERCDFP 205
           P  +S+     L   C CG     ++ K+     P  CG    + RG+ C+ P
Sbjct: 244 PYCQSNQTETSLHYLCWCGKQEKPEFVKN---LVPHSCGDPCGKTRGQDCEHP 293


>SPBC56F2.12 |ilv5||acetohydroxyacid
          reductoisomerase|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 404

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 90 NSSCMAAKELRTAGSMASSIIACAMLA 10
          NSS MA K LRT GS   +  + +++A
Sbjct: 5  NSSRMAMKALRTMGSRRLATRSMSVMA 31


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 164 RASNEKRGERCDFPLYPTGC 223
           +A   + GE+  FP+Y T C
Sbjct: 456 KADGSENGEKQIFPVYTTTC 475


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 202 SLVPDGLLASRPYSATEL 255
           +L+ DG++ S+PY A E+
Sbjct: 397 TLMSDGVVGSKPYVAPEV 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,772
Number of Sequences: 5004
Number of extensions: 19399
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)