Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25n15
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0522 - 25161595-25162285,25162394-25163139 27 1.6
01_06_1639 - 38833539-38833715 27 2.1
06_03_1165 - 28106604-28106915 27 2.7
06_03_0391 - 20287755-20288084,20288174-20288414,20288519-202888... 27 2.7
06_01_0044 + 415462-416058 26 3.6
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 26 4.8
02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032 25 6.3
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122... 25 6.3
12_02_0249 + 16427590-16428975,16428990-16429082 25 8.3
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 25 8.3
11_06_0016 - 19284810-19284926,19285527-19286879 25 8.3
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 195 VIFPCTRRVACVPPLFSYGT 254
V+ P T+R AC+PPL S+ T
Sbjct: 118 VVNPATQRWACLPPLPSHST 137
>01_06_1639 - 38833539-38833715
Length = 58
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 104 LRSTSTRVAWQRKSFGPQDRWHPASSPAP 18
LR + W+ + P+D HPASS AP
Sbjct: 13 LRGARSGRDWETMEWRPRDLDHPASSAAP 41
>06_03_1165 - 28106604-28106915
Length = 103
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 137 SSYPPACCGRASNEKRGE 190
SS P A CGRA+ KR E
Sbjct: 70 SSSPAAACGRAARSKRSE 87
>06_03_0391 -
20287755-20288084,20288174-20288414,20288519-20288844,
20288954-20289097,20289260-20289380,20289645-20289733,
20289821-20289891,20290165-20290309,20290390-20290479,
20290991-20291239
Length = 601
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 183 RFSLEARPQHAGGYELRCLYQSKLEFTPQHFNSSCMAAKELRTAGSMASSI 31
R ++ P H RC + + L+F P+ + + + LR AG+M + +
Sbjct: 292 RLGFDSVPVHLQRLRCRCNFHA-LKFVPEIQRAGSLLVQRLRRAGAMRTEM 341
>06_01_0044 + 415462-416058
Length = 198
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 210 YKGKSHLSPRFSLEARPQHAGGYELRCLYQSKLEFTPQHFNS 85
++G+ +L F R +++ + RCL ++L FTP +S
Sbjct: 93 FRGEIYLHINFVARTRARNSHWQKQRCLVFAELRFTPYVLDS 134
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/37 (24%), Positives = 16/37 (43%)
Frame = +2
Query: 146 PPACCGRASNEKRGERCDFPLYPTGCLRPALIQLRNY 256
PP C + R C P YP P ++++ ++
Sbjct: 188 PPVTCTPVVEKPRPPPCARPFYPVDMATPTMVEIPSW 224
>02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032
Length = 209
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 203 ENHTFPRA---FH*KHVRSTPEDTSFGAYTN 120
++H+F R +H H S P+ TS+G Y N
Sbjct: 178 KHHSFQRMHSHWHMHHCPSLPQATSYGRYKN 208
>01_01_0134 -
1224084-1224269,1224578-1224662,1224763-1225050,
1225114-1225334,1225511-1225642,1226218-1226494,
1226722-1226770,1226993-1227088,1227779-1227911,
1228241-1228391,1228484-1228674,1229167-1229382
Length = 674
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 195 HLSPRFSLEARPQHAGGYELRCLYQSKLEFTPQHFNSSCMAAKELR 58
HLS + RP GGY++ + Q L F+ + A EL+
Sbjct: 118 HLSGFLYINGRPISEGGYKIAYVRQEDLFFSQLTVRETLSLAAELQ 163
>12_02_0249 + 16427590-16428975,16428990-16429082
Length = 492
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 75 PCNSS*SAAE*ILTWIGISTEARILRRAADVLLMKSAGKGVI 200
PC+ S +E L W G ++ A +LR V L+ + ++
Sbjct: 398 PCSPPVSESEVALLWSGDASGAVVLRLGGTVCLLDRRRRAIV 439
>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 18 WRRR*CWMPSILRSEALSLPCNSS*SAAE*ILTWIGI 128
WRRR W S+ + + L +S S I W+G+
Sbjct: 1245 WRRRRSWSRSMGQLNLIQLCVHSRASRCSKIARWMGV 1281
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 231 GRKQPVGYKGKSHLSPRFSLEARP 160
GRK P + S LS +FSL +RP
Sbjct: 29 GRKPPTFSQQPSSLSSQFSLPSRP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,100
Number of Sequences: 37544
Number of extensions: 154310
Number of successful extensions: 462
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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