Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n15
         (267 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.028
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    31   0.11 
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    30   0.20 
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    29   0.34 
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    29   0.45 
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    29   0.60 
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    27   1.4  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    27   1.4  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U41018-2|AAA82325.2|  260|Caenorhabditis elegans Hypothetical pr...    27   1.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   1.8  
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical p...    25   5.6  
DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.      25   5.6  
U42832-3|AAA83573.2|  361|Caenorhabditis elegans Tetraspanin fam...    25   7.4  
U88167-4|AAB42228.3|  452|Caenorhabditis elegans Tetraspanin fam...    25   9.7  

>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.028
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
 Frame = +2

Query: 56  VRSSFAAMQLELKCCGVNS------NLDWYK--H-RSSYPPACC 160
           V++++  + +E  CCGV+S      N  WY+  H R  +PPACC
Sbjct: 173 VKTAWDKIMIEKSCCGVDSKIGEFNNSGWYQLNHGRYQFPPACC 216


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 56  VRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRG-ERCDFPLYPTGCL 226
           V S++       +CCGV ++ DW    ++ P +CC     E  G  R + PL+  GC+
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTF-TTIPDSCC---IEEIEGCARENAPLFEPGCI 184


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 47  DPAVRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRG 187
           + A + +F  +Q + +CCGV +  DW   R    P+     + E  G
Sbjct: 133 ETAFKDAFDTVQEKFECCGVKTYTDWLSARWDAEPSTQLEVNEEDAG 179


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  IDPAVRSSFAAMQLELKCCGVNSNLDWYK 130
           +DP +  +   +Q + KCCG N+  DW K
Sbjct: 142 LDPNIAKAVNYLQRDSKCCGSNAFNDWPK 170


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
 Frame = +2

Query: 56  VRSSFAAMQLELKCCGVN--------SNLDWYKHRSS----YPPACCGRASNEK-RGERC 196
           +  S+ A+Q   KCCGVN            WY H+ +     P +CC  +  E+ R    
Sbjct: 144 ITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCCIPSEIERCRSNPF 203

Query: 197 DF----PLYPTGCLRPALIQLRNYVN 262
           D     P Y + C  P    L + +N
Sbjct: 204 DQDAPPPYYTSTCYEPLQNDLLHVMN 229


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 77  MQLELKCCGVNSNLDWY 127
           +Q EL+CCGV++  DW+
Sbjct: 140 LQRELQCCGVDNYTDWH 156


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 74  AMQLELKCCGVNSNLDWYKH-RSSYPPACCGRASNEKRGERCDFPLYPTGCLRPALI 241
           A+Q  L+CCGV+S    Y+    SY   C    ++  + E+C  P     C R ++I
Sbjct: 160 ALQENLECCGVSSIAQGYRDWNMSYQFNC---TNSNPQPEKCGVPF---SCCRKSVI 210


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 74  AMQLELKCCGVNSNLDWYKH-RSSYPPACCGRASNEKRGERCDFPLYPTGCLRPALI 241
           A+Q  L+CCGV+S    Y+    SY   C    ++  + E+C  P     C R ++I
Sbjct: 184 ALQENLECCGVSSIAQGYRDWNMSYQFNC---TNSNPQPEKCGVPF---SCCRKSVI 234


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 22   AGDDAGCHRSCGPKLFRCHAT 84
            + D+  C ++C P +F+C AT
Sbjct: 3699 SSDEQNCDKACDPWMFKCAAT 3719


>U41018-2|AAA82325.2|  260|Caenorhabditis elegans Hypothetical
           protein ZK816.4 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 137 SSYPPACCGRASNEKRGERCDFPLYPTGCL 226
           S Y P  CG    EK  E C  PLY  G +
Sbjct: 52  SMYQPTTCGEVEQEKVKE-CADPLYKMGAI 80


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 22   AGDDAGCHRSCGPKLFRCHAT 84
            + D+  C ++C P +F+C AT
Sbjct: 3699 SSDEQNCDKACDPWMFKCAAT 3719


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 47  DPAVRSSFAAMQLELKCCGVNSNLDW 124
           DP ++    +MQ    CCG+N   DW
Sbjct: 160 DPDLQLLIDSMQETWMCCGINGADDW 185


>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
          protein R06F6.6 protein.
          Length = 416

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 77 WQRKSFGPQDRWHPASSPAP 18
          WQRK   P   +HP + P P
Sbjct: 31 WQRKMVHPSSAFHPYTRPIP 50


>AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical
           protein Y92H12A.3 protein.
          Length = 249

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 156 HAGGYELRCLYQSKLEFTPQHFNSSCMAAKELRTAGSMASS 34
           H  G  ++   Q  LE   QHF+S+C+  K+  T   M+ S
Sbjct: 122 HKKGNPMKLTLQQVLEHL-QHFSSTCVEKKQRMTETFMSRS 161


>Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 158 STPEDTSFGAYTNPS*NSLRSTSTRVAWQRKSFG-PQDRWHPASSPAPCS 12
           S+ E+++FG   +PS +S+ S S+   + +      Q  W P     P S
Sbjct: 573 SSVEESAFGVLPSPSTSSMNSVSSPAPFGKFQMSTSQTEWSPNPDDLPGS 622


>Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 158 STPEDTSFGAYTNPS*NSLRSTSTRVAWQRKSFG-PQDRWHPASSPAPCS 12
           S+ E+++FG   +PS +S+ S S+   + +      Q  W P     P S
Sbjct: 573 SSVEESAFGVLPSPSTSSMNSVSSPAPFGKFQMSTSQTEWSPNPDDLPGS 622


>DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 158 STPEDTSFGAYTNPS*NSLRSTSTRVAWQRKSFG-PQDRWHPASSPAPCS 12
           S+ E+++FG   +PS +S+ S S+   + +      Q  W P     P S
Sbjct: 573 SSVEESAFGVLPSPSTSSMNSVSSPAPFGKFQMSTSQTEWSPNPDDLPGS 622


>U42832-3|AAA83573.2|  361|Caenorhabditis elegans Tetraspanin family
           protein 16 protein.
          Length = 361

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
 Frame = +2

Query: 50  PAVRSSFAAMQLELKCCGVNSNLD-----WY----KH-RSSYPPACC 160
           P +   +     + KCCGV +  D     WY    KH R   P +CC
Sbjct: 217 PHIMEEWNKAHRQFKCCGVRNLTDFVESKWYIMQKKHPRQRIPDSCC 263


>U88167-4|AAB42228.3|  452|Caenorhabditis elegans Tetraspanin family
           protein 19 protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +2

Query: 62  SSFAAMQLELKCCGVNSNLDWYK-HRSSYPPAC 157
           S     Q  +KCCGV    D+ K H  +Y   C
Sbjct: 190 SEMRTYQARMKCCGVEGADDYSKSHIMTYVNPC 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,270,207
Number of Sequences: 27780
Number of extensions: 114649
Number of successful extensions: 355
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)