Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25n12
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0479 + 14529783-14530613 33 0.32
11_06_0397 + 23110842-23111164,23111714-23111909,23114120-231144... 29 3.0
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 29 5.2
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 29 5.2
05_05_0191 + 23127068-23127331,23127514-23127546 29 5.2
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 6.9
06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422 28 9.1
05_03_0590 - 15884485-15884489,15884702-15884790,15885086-158852... 28 9.1
03_06_0445 - 33982018-33982965,33984308-33984463 28 9.1
>05_03_0479 + 14529783-14530613
Length = 276
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 197 THYHSDSDSVASRKSKTRYINPAIYVEKIEATHSVTSLQTGSCVDDVTPHPHSDYRSNST 376
T++ SDSD+ S K+K ++P + + S T+ + V D TP P + R+N +
Sbjct: 146 TNFPSDSDT-PSAKAKQMKLHPRRHTTPDKTPSSSTAAAAKASVPDPTPAPPEEDRANDS 204
Query: 377 PF 382
F
Sbjct: 205 SF 206
>11_06_0397 +
23110842-23111164,23111714-23111909,23114120-23114410,
23116292-23116297
Length = 271
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 662 EKQKQHTIPATTPEQREASYRKWLERK 742
+KQK H I T ++ A YR+W+ER+
Sbjct: 180 DKQKNHDIRLKTLLEQFARYREWIERE 206
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 602 EAFRQWLARKEQE---KREKARLEKQKQHTIPATTPEQREASYRK 727
E FRQW A +E+E R++ R + ++H + A Q+ RK
Sbjct: 647 EQFRQWKATREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRK 691
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 227 ASRKSKTRYINPAIYVEKIEATHSVTSLQTGSCVDDVTPHPHSDYRSNST 376
A R K + + ++ IEA + + C DV P P S RS+ST
Sbjct: 256 AKRFDKVKIVRESMN-RMIEAWKEIPDMDEEVCSSDVPPSPQSQTRSSST 304
>05_05_0191 + 23127068-23127331,23127514-23127546
Length = 98
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +2
Query: 626 RKEQEKREKA--RLEKQKQHTIPATTPEQ 706
+ E+EKR++ +LEK + T PATTP Q
Sbjct: 61 KSEEEKRKRVHRKLEKLHRPTSPATTPPQ 89
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 527 EKCQAHL-HDKYDRYEVCLHLYKLECDLPVMYKIFFSDLLKIH 402
EK + L HD Y + CLH+Y E K +D+L+ H
Sbjct: 474 EKVKEKLEHDAYQEFLKCLHIYSQEIITRSELKNLVNDILQQH 516
>06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422
Length = 241
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 326 VDDVTPHPHSDYR--SNSTPFLSGR 394
+D+VT H HS Y+ +N TP + G+
Sbjct: 36 IDEVTTHTHSPYKTHANPTPVIDGQ 60
>05_03_0590 -
15884485-15884489,15884702-15884790,15885086-15885251,
15885333-15885393,15886256-15886392,15887936-15888002
Length = 174
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 215 SDSVASRKSKTRYINPAIYVEKIEATHSVTSLQTGSCVDDV 337
SD V S+ T A Y E I AT VTS + G+ +DD+
Sbjct: 129 SDLVRSKHIDTN--EAASYAESIGATLFVTSAKAGTGIDDI 167
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 290 THSVTSLQTGSCVDDVTPHPHSDYRSNSTPFL 385
T + S Q G + +T HPHSD +S +T L
Sbjct: 45 TDVLVSTQVGKRLRYLTKHPHSDIQSMATDLL 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,120,106
Number of Sequences: 37544
Number of extensions: 370565
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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