Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n11
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0172 - 20877029-20878049,20880129-20880400                       31   0.73 
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393...    29   2.2  
04_04_0170 - 23268714-23268950,23269040-23269303,23269379-232694...    27   8.9  

>11_06_0172 - 20877029-20878049,20880129-20880400
          Length = 430

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 263 TYCLCLKYYQHLKCHQLHFQKNS-CLFL 183
           TYCLC K Y  LK + ++F  +S CL L
Sbjct: 352 TYCLCAKEYPLLKANHIYFTDDSECLAL 379


>06_01_0552 -
           3935804-3936145,3936247-3936346,3936600-3936725,
           3936802-3936991,3937105-3937338,3937640-3937788,
           3937890-3938073,3938159-3938195,3938293-3938508
          Length = 525

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -1

Query: 394 HLLEKIQNTIYLLELVWRFNWLSGFLFAATTFFHS*VGRS 275
           HL+EKI N  YL  +V  F+ L G L +A T   + VG S
Sbjct: 278 HLIEKILNPSYLDGMVSTFSNLQGILKSAGTSAVAWVGES 317


>04_04_0170 -
           23268714-23268950,23269040-23269303,23269379-23269494,
           23269574-23269792,23269961-23270080,23270170-23270283,
           23271870-23271946,23272527-23272657
          Length = 425

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 121 KRQCP*IQLIGKHLEKTTRVNFREKLKNQSIN 26
           K+Q P ++ +  HLEK  +++ R+  K+ SI+
Sbjct: 388 KKQRPSMEQVVSHLEKALKISMRDDDKHNSIS 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,839,203
Number of Sequences: 37544
Number of extensions: 191505
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)