Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n08
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    29   0.90 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   4.8  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   6.3  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   8.4  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   8.4  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   8.4  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 650 PMYTYNF*LSGSSGNRSSVRKMTTIQGISPNLLKPSSL 537
           P++TYNF +SG  G+ S + K T +  +    +KPS +
Sbjct: 287 PLFTYNFNISGFDGD-SCIEKFTPLDALG---IKPSPI 320


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 608 NRSSVRKMTTIQGISPNLLKPSSLWYAVSRAIPS 507
           N ++     +  GISP ++ PS   +A  +AIPS
Sbjct: 423 NSNASHSAFSFSGISPAIISPSCSSHAFVKAIPS 456


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 186 LVIILIVS*CPISIIIGFQWSC 121
           +V+IL V  C IS+ + F WSC
Sbjct: 65  VVMILRVPLCIISVTLWFLWSC 86


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 231 YKKGLVNTYLNNYLRLVIILIVS*CPISI 145
           YK GLV TYL +Y   ++   VS  P ++
Sbjct: 130 YKLGLVGTYLGDYFGFLLPERVSGFPFNV 158


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 554 ASSVKYPGWLSFCELSSDSLTTPKVRSC 637
           AS  +YPG+      S  S T   VRSC
Sbjct: 198 ASHAEYPGFSGLTPFSIHSPTASSVRSC 225


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 104 YQSHVKQDHWNPIIIEIG 157
           Y+ H+KQ HW+   I++G
Sbjct: 307 YEKHLKQPHWDGSDIDMG 324


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 190 TIGYHSNCFIVPDFYYYRVPVVLFNVTLIFVGIY 89
           T+ Y S  F+ P   Y  +PV+ F    IF+ +Y
Sbjct: 389 TVAYMSFQFVAPPTGYEIIPVLWFIFFGIFIPVY 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,061
Number of Sequences: 5004
Number of extensions: 61782
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)