Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n08
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0726 - 24630080-24630778,24630899-24631011,24631088-246311...    29   2.9  
01_05_0436 + 22134275-22134387,22134481-22135249,22137024-221370...    29   3.8  
03_05_0277 - 22651630-22651757,22652038-22652725                       28   6.6  
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675...    28   8.7  
03_05_0508 - 25024826-25026439                                         28   8.7  
03_05_0286 + 22750132-22750630,22750892-22750923,22751121-227512...    28   8.7  

>01_05_0726 -
           24630080-24630778,24630899-24631011,24631088-24631169,
           24631248-24631337,24631412-24631469,24631661-24631756,
           24631835-24631908,24632006-24632068,24634111-24634320,
           24634869-24635048
          Length = 554

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 74  YSSYTVYSNKYQSHVKQDHWNPII 145
           YS++TV + K+QSH  +D+ NP +
Sbjct: 192 YSAHTVLNVKFQSHRSRDYTNPYL 215


>01_05_0436 +
           22134275-22134387,22134481-22135249,22137024-22137086,
           22137375-22137755,22137900-22138001
          Length = 475

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 428 RTLDTSVTFIGGSNKSLQGRAAAGGTLTESLWRQRTKARKASASSVK 568
           ++L+T +T + G+N  L+   A GG   ++  R R   ++A     K
Sbjct: 330 KSLETEITELEGTNTKLEKHIAGGGGAADAAMRARRAQQRAKVQISK 376


>03_05_0277 - 22651630-22651757,22652038-22652725
          Length = 271

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 532 TLSPERFRQGSASRSPALEALVAATNKCYRCIECSRTF 419
           T++P + +Q     SP+  A  +A NK + C  C R F
Sbjct: 47  TVTPSQQQQQQQQGSPSSPAASSAPNKVFSCNFCMRKF 84


>03_06_0222 +
           32466379-32466741,32466849-32466948,32467443-32467547,
           32467627-32467789,32467995-32468115,32468625-32468705,
           32468813-32468911,32468955-32468986,32468987-32469137,
           32469477-32469563,32470290-32470409,32470514-32470645,
           32470743-32470840,32470919-32471042,32471126-32471233,
           32471822-32471957,32472751-32472861,32472963-32473026,
           32473133-32473205,32473762-32473938,32474012-32474122,
           32474189-32474449,32474811-32474981,32475073-32475228,
           32475590-32475823,32475936-32476103,32476316-32476425,
           32476513-32477041
          Length = 1394

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 255 GFNDCTLYCNVVNKRIRNADAVNPWL 332
           G NDC L C   +     ADA N WL
Sbjct: 257 GLNDCKLLCINSSTEADGADAENSWL 282


>03_05_0508 - 25024826-25026439
          Length = 537

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 484 QGCGWRNPDGIALETAYQSE-EGFSKFGEIPWMVV 585
           QG  WR PDG+A E     E  G S   ++P + V
Sbjct: 488 QGFAWRLPDGVAAEDVSMEELVGLSTRRKVPLVAV 522


>03_05_0286 +
           22750132-22750630,22750892-22750923,22751121-22751256,
           22751909-22751913
          Length = 223

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 529 AYQSEEGFSKFG-EIPWMVVILRTELRFPDDPESQKLYVYIGGGSLIHPSVVLTAGHMLN 705
           AY ++E   +F  +I  +V ++R +    +D  + K Y Y+ G  +     +LT+ H++ 
Sbjct: 3   AYLNQEQRQQFSKQISSVVWMIRVDSAAKEDDLATKDYAYVAGVCMSPVGHILTSAHVVK 62

Query: 706 ESV 714
             V
Sbjct: 63  PGV 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,406
Number of Sequences: 37544
Number of extensions: 407081
Number of successful extensions: 1078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)