Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n04
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    29   0.84 
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   3.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   4.5  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   5.9  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   7.8  

>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +3

Query: 291 IEDSFCTSIDTNYDPIISIICAMYI-----AFGIVYTLFGYRCFKASMFLTGFTFGSAVV 455
           + + F T + +  D    ++ AM I      F I Y L+     +   FLT  T  S  +
Sbjct: 278 VPEGFITFLASTVDTGFMVLVAMSIHNIVEGFTIAYPLYLAWKSRPKAFLTAATLSSCSL 337

Query: 456 YLICLQEYLMPPYGNVGVALCAGLLFGLI 542
            L  L  +L+   G +G +     L+G+I
Sbjct: 338 PLGSLIAFLVMEAGGIGSSDFLNFLYGII 366


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 501 VGVALCAGLLFGLITMLIQYVGLFMTGFHTGLLLAIAGLAV 623
           +G A+  G LF ++          MT F  GLL+A  G+A+
Sbjct: 452 IGTAVLVGCLFAILDDTNSPPTQGMTAFIVGLLIAAIGMAL 492


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 242 WWYQLTHF*HLSSSPNDVISDYSNYSA 162
           +W+ LTHF  LS SP  +I    N +A
Sbjct: 754 YWFPLTHFMSLSFSPTALIGLDKNLNA 780


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 525 LLFGLITMLIQYVGLFMTGFHTGLLLAIAGLAV-YDHFL 638
           L+ GL+   I   G FM+GF+  L+  IAG  V Y  FL
Sbjct: 371 LITGLVLQSI--FGFFMSGFYNQLVHKIAGFCVIYGIFL 407


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 354 AMYIAFGIVYTLFGYRCFKASMFLTGFTFGSAVVYLICL 470
           AM  A G+++   GY  + A M  T F +G   VYL+CL
Sbjct: 95  AMDNAAGVLFICVGYFTYLA-MPAT-FLYGRRCVYLVCL 131


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 366 AFGIVYTLFGYRCFKASMFLTGFTFGSAVV 455
           +FG  Y    + CF +  F T FTF  A V
Sbjct: 49  SFGNAYICTSFLCFHSDDFKTRFTFPLAAV 78


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = -2

Query: 617 QSSYSQQKSGVETSHEQPNVLYQHGDETEE*SRAKRNSDITIRRHQV-----LL*AYEIY 453
           QSS SQQ +   +S       YQ+  + +  SRA  N+D    +H +      +  Y I 
Sbjct: 496 QSSQSQQPAWNVSSR------YQNNSKVQTTSRASENADTNKTQHNIKYIDSYVPEYSIA 549

Query: 452 NSRAKSETSQKH 417
              A  +T+++H
Sbjct: 550 RQSANQKTNEQH 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,235
Number of Sequences: 5004
Number of extensions: 68701
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)