Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n04
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    31   0.66 
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919...    30   1.5  
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659...    30   2.0  
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916...    29   2.7  
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363...    29   2.7  
05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783...    28   8.1  

>12_02_0932 +
           24519204-24519380,24520074-24520128,24520251-24522202,
           24522288-24522446,24522878-24523049,24523131-24523429,
           24524037-24524285
          Length = 1020

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 522 GLLFGLITMLIQYVGLFMTGFHTGLLLAIAG---LAVYDHF 635
           GL F +IT ++   GL    +H GLLL+ +G   L + +HF
Sbjct: 361 GLFFAVITFIVLSQGLISKKYHEGLLLSWSGDDALEMLEHF 401


>07_01_1149 +
           10789733-10791209,10791326-10791588,10791745-10791954,
           10792398-10792475,10792505-10792705,10792768-10792908,
           10794749-10795714,10797824-10797919,10798450-10798638,
           10798849-10798956
          Length = 1242

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +3

Query: 288 HIEDSFCTSIDTNYDPIISIICAMYIAFGIVYTLFGYRCFKASMFLTGFTFGSAVVY--L 461
           ++  +F   +  +     +I+  +++AFG   T    R  K   +LTG    ++VV   +
Sbjct: 342 YVNSAFLGHVSLDKSSGDNILSNLHLAFGAYGTKHAIRARKVEEYLTGKILSASVVLEAI 401

Query: 462 ICLQEYLMPPYGNV----GVALCAGLLFGLITMLIQYV 563
             L+E ++P  G       V++  G LF  ++ L + V
Sbjct: 402 RLLRETIVPVEGTTHPEYRVSVAVGFLFSFLSPLCKGV 439


>07_01_1146 +
           10756897-10757065,10763869-10765521,10765638-10765900,
           10766057-10766266,10766818-10767036,10767379-10768344,
           10768575-10768670,10768772-10768870,10769349-10769538,
           10769623-10769855
          Length = 1365

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +3

Query: 288 HIEDSFCTSIDTNYDPIISIICAMYIAFGIVYTLFGYRCFKASMFLTGFTFGSAVVY--L 461
           ++  +F   +  +     +I+  +++AFG   T    R  K   +LTG    ++VV   +
Sbjct: 457 YVNSAFLGHVSLDKSSGDNILSNLHLAFGAYGTEHAIRARKVEEYLTGKILSASVVLEAI 516

Query: 462 ICLQEYLMPPYGNV----GVALCAGLLFGLITMLIQYV 563
             L+E ++P  G       V++  G LF  ++ L + V
Sbjct: 517 RLLRETIVPVEGTTHPEYRVSVAVGFLFSFLSPLCKGV 554


>06_01_1113 -
           9164953-9165044,9166453-9166586,9166624-9166734,
           9166815-9167066,9167152-9168186,9168313-9169187,
           9169476-9169673
          Length = 898

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 616 SPAIASKSPVWKPVMNSPTYCISMVMRPKSNPAQSATPTLP*GGIRYSCRHMRYTTAEPK 437
           SP++    P  +PV  SPT   +    P + P+  A+P  P   +         TT+EPK
Sbjct: 492 SPSLQPAFPAPQPVQASPT-SPAKQHAPPAPPSVQASPPTPQSALVEQVHIPEGTTSEPK 550

Query: 436 VKP 428
             P
Sbjct: 551 SNP 553


>01_01_0492 -
           3632812-3633189,3633563-3633709,3633906-3633995,
           3634278-3634331,3636434-3636598,3637252-3637488,
           3637610-3637696,3637846-3638022
          Length = 444

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -2

Query: 365 NIHSTYYAY--NGIIVGIDRSAK*IFNVGSIEFVCHVW--PTMGHWWYQL 228
           N+H + +    N I +G   S   ++N    +    +W  P  GHWW QL
Sbjct: 281 NLHCSGFVQTNNRIAIGAAISPTSVYNGRQFDISLLIWKDPRRGHWWLQL 330


>05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,
            7830323-7830444,7830557-7830672,7830760-7831567,
            7831800-7832528,7832638-7832859,7833089-7833184,
            7833273-7833467,7834303-7834416,7835368-7835651,
            7836216-7836293,7836326-7836449,7836739-7836786
          Length = 1061

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 393  GYRCFKASMFLTGFTFGSAVVYLICLQEYLMPPYGNVGVALCA 521
            G  CFKA  F T       V++ +C Q  ++ P+  V   LCA
Sbjct: 1019 GSVCFKAG-FQTVQNIAQLVIFSVCCQGRVLDPFVFVQCKLCA 1060


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,557,625
Number of Sequences: 37544
Number of extensions: 420373
Number of successful extensions: 995
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)