Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n04
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   2.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   2.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 600 LAIAGLAVYDHFLDKRPTAYWMCVVVLLC 686
           + +A L   D  ++K  T YW  V   LC
Sbjct: 359 IGLASLGASDEEIEKLSTIYWFTVEFGLC 387


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 203 SPNDVISDYSNYSAFQRHVSISHCKLKST*SLSQKP 96
           +P+ V+SDYS+YS     +  +   L+    +S  P
Sbjct: 285 TPSVVVSDYSDYSYLDEKLERNDLDLEKYEGISSTP 320


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 353 CYVYCIWD 376
           CY+YC+W+
Sbjct: 71  CYMYCLWE 78


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 590 GVETSHEQPNVLYQHGD 540
           GV+   +Q NV+++HGD
Sbjct: 12  GVQAELKQINVIFRHGD 28


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 HTNSMDPTLKIHFALR 315
           H +  DP + +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 HTNSMDPTLKIHFALR 315
           H +  DP + +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 HTNSMDPTLKIHFALR 315
           H +  DP + +HFALR
Sbjct: 203 HGDFKDPLIPVHFALR 218


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 HTNSMDPTLKIHFALR 315
           H +  DP + +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 315 IDTNYDP---IISIICAMYIAFGIVYTLFGYRCFKASM 419
           +D  YD    ++S   AMY+   I  +   YR FKA++
Sbjct: 489 VDHEYDQNVWVLSNKLAMYLYGSIDSSKINYRIFKANV 526


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 580 VSTPDFCWL*LDWPSTITSWTK 645
           +   D+  L  +W S I  WTK
Sbjct: 379 IQNGDYVVLETEWSSFINPWTK 400


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 580 VSTPDFCWL*LDWPSTITSWTK 645
           +   D+  L  +W S I  WTK
Sbjct: 85  IQNGDYVVLETEWSSFINPWTK 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,189
Number of Sequences: 438
Number of extensions: 4354
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)