Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n03
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical p...   119   2e-27
Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical p...   119   2e-27
AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical ...    29   2.6  

>Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical
           protein C35C5.10b protein.
          Length = 318

 Score =  119 bits (287), Expect = 2e-27
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 2/203 (0%)
 Frame = +3

Query: 120 MFEWAYSGANKAVPRNVGPECAFFLTPQRKIIETIIVFLICVYLLVKTYPILKIPIDTDY 299
           ++E A  G + ++  N G EC  +L   ++ +E+I+   +  +        + IP+D  +
Sbjct: 29  IWELAIGGIDSSIQGNGGEECMNYLPSWQRFLESIVFIPLSFWAAY-----MSIPLDCSF 83

Query: 300 TKSDRGGKRXXXXXXXXX-WGMEIGFKFASHTVIYLLNPCHVTTLIQIYLLAAP-PSKIV 473
           T   R   R          +G E+ +K  S T I+LLNPCHVTT +Q+ LL     SK  
Sbjct: 84  TLPTRNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLLTMEGTSKKA 143

Query: 474 TALFRIHLYLLNGPLLAFLFPETASRKIFVEAALYWIQHGMMCIIPYYLLRLGGVYNIEP 653
             LFR+ LY + G   A  FP   +R +  E  +Y+ QH  + ++P YL+ + G +  E 
Sbjct: 144 CFLFRLMLYFMPGAWFALAFPILNTRNLPGEVFIYYAQHVAILVVPVYLMYIQGAFEPEK 203

Query: 654 IRDFNWSVFSYCLNLLYHFXILQ 722
             DF W+VF   L  LYHF ILQ
Sbjct: 204 PYDFGWTVFGISLFSLYHFVILQ 226


>Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical
           protein C35C5.10a protein.
          Length = 294

 Score =  119 bits (287), Expect = 2e-27
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 2/203 (0%)
 Frame = +3

Query: 120 MFEWAYSGANKAVPRNVGPECAFFLTPQRKIIETIIVFLICVYLLVKTYPILKIPIDTDY 299
           ++E A  G + ++  N G EC  +L   ++ +E+I+   +  +        + IP+D  +
Sbjct: 5   IWELAIGGIDSSIQGNGGEECMNYLPSWQRFLESIVFIPLSFWAAY-----MSIPLDCSF 59

Query: 300 TKSDRGGKRXXXXXXXXX-WGMEIGFKFASHTVIYLLNPCHVTTLIQIYLLAAP-PSKIV 473
           T   R   R          +G E+ +K  S T I+LLNPCHVTT +Q+ LL     SK  
Sbjct: 60  TLPTRNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLLTMEGTSKKA 119

Query: 474 TALFRIHLYLLNGPLLAFLFPETASRKIFVEAALYWIQHGMMCIIPYYLLRLGGVYNIEP 653
             LFR+ LY + G   A  FP   +R +  E  +Y+ QH  + ++P YL+ + G +  E 
Sbjct: 120 CFLFRLMLYFMPGAWFALAFPILNTRNLPGEVFIYYAQHVAILVVPVYLMYIQGAFEPEK 179

Query: 654 IRDFNWSVFSYCLNLLYHFXILQ 722
             DF W+VF   L  LYHF ILQ
Sbjct: 180 PYDFGWTVFGISLFSLYHFVILQ 202


>AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical
           protein K03H6.6 protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 186 FFLTPQRKIIETIIVFLICVYLL 254
           FFL  +RKI++TI +F  C +L+
Sbjct: 243 FFLAFRRKILQTICIFCACYFLI 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,790
Number of Sequences: 27780
Number of extensions: 363539
Number of successful extensions: 903
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)