Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n02
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    86   4e-18
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    40   3e-04
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    37   0.003
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    35   0.009
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    30   0.26 
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   1.1  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   2.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   5.6  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    25   7.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   7.4  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    25   9.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   9.8  

>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
 Frame = +2

Query: 179 SKQLVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVK---VN 349
           +K + YSE+G+P  V++     VP     +V VR LA+P+NP+DIN IQG YP K    N
Sbjct: 21  AKAIAYSEYGNPKEVLRAVSYNVPKCSKNQVNVRFLASPINPSDINQIQGVYPSKPPFTN 80

Query: 350 LPC-------VPXXXXXXXXXXXXXXXSRICPGNKVIVTKPVQGTWR-DIAIFNKDVLRV 505
             C                            PG   I+     G+WR ++ I  + ++ V
Sbjct: 81  DVCSSKPSAVAGNEGLVEVVDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPV 140

Query: 506 VPDSLGTV-EAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACGQNVIQI 661
              +  ++ EAATL+VNPCTAY +L     +  G   IQ+GANS  G   IQ+
Sbjct: 141 DKSAFPSIAEAATLSVNPCTAYCLLQHVVQLNKGDWFIQDGANSMVGIATIQL 193


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
 Frame = +2

Query: 224 VKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPXXXXXXXXXXXXX 403
           ++ +   +P   + E+LV++ AA +NP+D+    G +P  V    V              
Sbjct: 23  IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIVGRDYAGTVISGASH 82

Query: 404 XX-SRI--CPGNKVIVTKPVQGTWRDIAIFNKDVLRVVPDSLGTVEAATLTVNPCTAYRM 574
              +R+    G+++  TK   GT  +  I  +     +P +L   EAA++ V   TAY  
Sbjct: 83  LVGTRVFGTSGSELSFTK--DGTHAEYCIIPEKAAVRMPSNLSFTEAASVGVPFTTAYLA 140

Query: 575 LSDFKPVKDGLVVIQNGANSACGQNVIQI 661
           LS  +  K   +V+  GA  A G  V QI
Sbjct: 141 LSRGE-TKGSDIVLVVGALGAVGSAVCQI 168


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 224 VKYRECQVPP-LGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVP 364
           +K  E +VP  L   EVLV++ AA +N  D+   +G YP+ + LP VP
Sbjct: 17  LKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVP 64


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 173 LTSKQL--VYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKV 346
           +  KQL  V+   G P +V K+ E  V   G  EVLV +    V   D++ +QG +P+  
Sbjct: 3   IPDKQLAAVFHTHGGPENV-KFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPA 61

Query: 347 NLPCV 361
            +P +
Sbjct: 62  KMPLI 66



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 452 VQGTWRDIAIFNKDVLRVVPDSLGTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGAN 631
           V GT++   I N     ++P+S+    AA +     T YR L + K V  G  +   GA 
Sbjct: 124 VDGTFQHYCIANATHATIIPESVPLEVAAPIMCAGITCYRALKESK-VGPGEWICIPGAG 182

Query: 632 SACGQNVIQ 658
              G   +Q
Sbjct: 183 GGLGHLAVQ 191


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 40/170 (23%), Positives = 62/170 (36%), Gaps = 14/170 (8%)
 Frame = +2

Query: 176 TSKQLVYSEFGDPLHVVKYRE-CQVP---PLGSQEVLVRMLAAPVNPAD---INTIQGKY 334
           T    +Y+  G P  V+   +   +P    LG  +VLV ++A  +NP D   +NT Q   
Sbjct: 11  TKSAWLYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIA 70

Query: 335 PVKVNLPCVPXXXXXXXXXXXXXXXSRICPGNKVIVTKPVQGTWRD-------IAIFNKD 493
                LP +P                      +V   +      R        I   +KD
Sbjct: 71  KALFKLPNIPGYDFAGRVLAVGSEVKEFSATQRVWGCQSFPRAGRQGGSCATHIVTGDKD 130

Query: 494 VLRVVPDSLGTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACG 643
           V   +PD +   E A   +   TA+ +L     VK G  ++  GA+   G
Sbjct: 131 VWH-LPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVG 179


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 451 WFSYYDFVPRTYSTDFFTYLFNNSNSFI 368
           W+ Y +++P+T++T    Y   N N+F+
Sbjct: 98  WYGYIEYLPKTFNTPL--YFNENDNAFL 123


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 227 KYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCV 361
           KY +   P L S  +L         P D +T+QGK  V   L CV
Sbjct: 117 KYADSDRPKLSSSSLLSLPDQKIPFPVDYSTVQGKQVVLTVLDCV 161


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -1

Query: 315 FMSAGLTGAASMRTNTSWLPSGGTWHSLYFTTCNG 211
           FM+ G +  +  R N SWL     W     T   G
Sbjct: 357 FMNFGTSSDSFFRDNLSWLSKANNWSKFTATAALG 391


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = +2

Query: 425 GNKVIVTKPVQGTWRDIAIFNKDVLRVVPDSLGTVEAATLTVNPCTAYRMLSDFKPVKDG 604
           G++V+   P  G +         ++  V + +    A+   +   TAY ++ +  PVK G
Sbjct: 83  GDRVVYLTPF-GAYAQYTNVPTTLVSKVSEKIPLKIASAALLQGLTAYTLIEEAYPVKTG 141

Query: 605 LVVIQNGANSACGQNVIQI 661
             V+ + A    G  + Q+
Sbjct: 142 DTVVVHAAAGGVGLLLCQM 160


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -3

Query: 406 FFTYLFNNSNS-----FISRHTR*IYFHRILSLYCVYVS 305
           F +Y F+  N+       S H +  Y HR LS+Y V +S
Sbjct: 123 FVSYFFSLKNNPFCLMLFSSHEKMNYLHRWLSVYAVLIS 161


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 38  VKQIKSVVYIFKRINMALIPYSKTLYSAFKSY 133
           V+ I  VV + K+IN A +   K+ +  FK+Y
Sbjct: 413 VELIDEVVSLTKKINEAALKEGKSKFRDFKAY 444


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 176 TSKQLVYSEFGDPLHVVKYRECQV 247
           T+  + Y  F DP H++K RE  V
Sbjct: 74  TAAFVAYCRFSDPSHLLKAREISV 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,932
Number of Sequences: 5004
Number of extensions: 50779
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)