Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25n02
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0011 + 90859-91169,92075-92622,92701-92803,92899-92998,934... 101 4e-22
11_01_0011 + 95001-95311,96217-96764,96843-96945,97041-97140,975... 101 4e-22
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 53 2e-07
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 42 4e-04
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 40 0.002
04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115... 36 0.022
09_04_0641 + 19172370-19172459,19172539-19172680,19172951-191730... 32 0.47
04_03_0629 + 18179065-18179148,18180146-18180287,18180987-181810... 28 5.8
04_04_1533 - 34195537-34195711,34196150-34196364,34197004-341972... 28 7.7
>12_01_0011 +
90859-91169,92075-92622,92701-92803,92899-92998,
93453-93529,93608-93686,94108-94226,94330-94423
Length = 476
Score = 101 bits (243), Expect = 4e-22
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Frame = +2
Query: 188 LVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPC--V 361
++Y + G P V++ E +G ++V VRMLAAP+NP+D+N ++G YPV+ LP
Sbjct: 146 VLYDQHGPPDKVLRVAELPAAKIGERDVCVRMLAAPINPSDLNRVEGVYPVRPPLPAAVA 205
Query: 362 PXXXXXXXXXXXXXXXSR-ICPGNKVIVTKPVQGTWRDIAIFNKDVLRVVPDSLGTVEAA 538
SR + PG+ VI + P GTW+ + V + A
Sbjct: 206 GYEGVGQVHALGGAVDSRLLSPGDWVIPSPPSLGTWQTYIVNPATAWHRVRSDVPPQYVA 265
Query: 539 TLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACGQNVIQI 661
T+TVNP TA RML DF + G ++QNGA S GQ VIQ+
Sbjct: 266 TVTVNPLTALRMLCDFVNLAPGDTLVQNGATSIVGQCVIQL 306
>11_01_0011 +
95001-95311,96217-96764,96843-96945,97041-97140,
97595-97671,97750-97828,98250-98368,98472-98565
Length = 476
Score = 101 bits (243), Expect = 4e-22
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Frame = +2
Query: 188 LVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPC--V 361
++Y + G P V++ E +G ++V VRMLAAP+NP+D+N ++G YPV+ LP
Sbjct: 146 VLYDQHGPPDKVLRVAELPAAEIGERDVCVRMLAAPINPSDLNRVEGVYPVRPPLPAAVA 205
Query: 362 PXXXXXXXXXXXXXXXSR-ICPGNKVIVTKPVQGTWRDIAIFNKDVLRVVPDSLGTVEAA 538
SR + PG+ VI + P GTW+ + V + A
Sbjct: 206 GYEGVGQVHALGGAVDSRLLSPGDWVIPSPPSLGTWQTYIVNPATAWHRVRSDVPPQYVA 265
Query: 539 TLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACGQNVIQI 661
T+TVNP TA RML DF + G ++QNGA S GQ VIQ+
Sbjct: 266 TVTVNPLTALRMLCDFVNLAPGDTLVQNGATSIVGQCVIQL 306
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 53.2 bits (122), Expect = 2e-07
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Frame = +2
Query: 182 KQLVYSEFGDPLHVVKYRE-CQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPC 358
+ +V FG P V++ R+ VP L +VLVR A +NP D+ G Y + P
Sbjct: 31 RAVVVPRFGGP-EVLEVRQGVPVPDLKPGDVLVRARAVSINPLDLRMRSG-YGRSIFEPV 88
Query: 359 VPXXXXXXXXXXXXXXXSRICP---GNKVI-VTKP--VQGTWRDIAIFNKDVLRVVPDSL 520
+P + + G +V P ++GT+ D AI ++D L P +L
Sbjct: 89 LPLIIGRDISGEVAATGTSVSSFTIGQEVFGALHPTAIRGTYTDYAILSQDELTSKPSTL 148
Query: 521 GTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACGQNVIQI 661
VEA+ + TA+R L + +G V+ G A G +Q+
Sbjct: 149 SHVEASAIPFAALTAWRALHGTARISEGQRVLVIGGGGAVGLAAVQL 195
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 41.9 bits (94), Expect = 4e-04
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 10/172 (5%)
Frame = +2
Query: 176 TSKQLVYSEFGDPLHVVKYRECQ-VPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVN- 349
T K Y ++GD V+K + VP + +VLVR+ AA +NP D GK+ +
Sbjct: 81 TMKAWAYDDYGDG-SVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRRAGKFKATDSP 139
Query: 350 LPCVPXXXXXXXXXXXXXXXSRICPGNKV---IVTKPVQ-----GTWRDIAIFNKDVLRV 505
LP VP + G++V I K ++ G+ + + +L +
Sbjct: 140 LPTVPGYDVAGVVVKAGRKVKGLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEEKLLAL 199
Query: 506 VPDSLGTVEAATLTVNPCTAYRMLSDFKPVKDGLVVIQNGANSACGQNVIQI 661
P SLG +AA L + TA+ L ++I GA G IQ+
Sbjct: 200 KPKSLGFAQAAGLPLAIETAHEGLERAGFSAGKSILILGGAGGV-GSLAIQL 250
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 39.5 bits (88), Expect = 0.002
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 1/140 (0%)
Frame = +2
Query: 245 VPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVP-XXXXXXXXXXXXXXXSRIC 421
+PP G EVLV + AA VN AD QG+YP P SR
Sbjct: 24 LPPPGEGEVLVGVSAAGVNRADTVQRQGRYPAPPGASPYPGLECSGTILALGPNVPSRWA 83
Query: 422 PGNKVIVTKPVQGTWRDIAIFNKDVLRVVPDSLGTVEAATLTVNPCTAYRMLSDFKPVKD 601
G++V G + + + L VP+ + +AA L CT + + +
Sbjct: 84 VGDQVCALLS-SGGYAEKVVVPAGQLLPVPEGVSLTDAAGLPEVACTVWSTVFVTSHLSP 142
Query: 602 GLVVIQNGANSACGQNVIQI 661
+ +G +S G IQI
Sbjct: 143 SESFLIHGGSSGIGTFAIQI 162
>04_03_0566 +
17209455-17209565,17210159-17210203,17211456-17211569,
17211943-17212081,17212324-17212415,17213245-17213517
Length = 257
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 176 TSKQLVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKY-PVKVNL 352
T + + Y+ +G +K+ E VP + EVL+++ AA VNP D + +G P
Sbjct: 73 TMRAVQYTGYGGGAGALKHVEIPVPSVKKHEVLIKVEAASVNPIDWSIQKGMLRPFLPKF 132
Query: 353 PCVP 364
P +P
Sbjct: 133 PFIP 136
>09_04_0641 +
19172370-19172459,19172539-19172680,19172951-19173039,
19173096-19173806
Length = 343
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 176 TSKQLVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPAD 310
T + + Y +G +K+ E +P EVL++M AA +NP D
Sbjct: 13 TMRAVQYDGYGGGAEGLKHVEVPIPSPKKGEVLIKMEAASINPID 57
>04_03_0629 +
18179065-18179148,18180146-18180287,18180987-18181078,
18181272-18181964
Length = 336
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 194 YSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPAD 310
Y G +K+ E VP EVL+++ AA +NP D
Sbjct: 17 YDASGGGAAGLKHVEVPVPSAKKNEVLLKLEAATINPVD 55
>04_04_1533 -
34195537-34195711,34196150-34196364,34197004-34197205,
34197283-34197457,34197556-34197865,34197963-34198169
Length = 427
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +2
Query: 62 YIFKRINMALIPYSKTLYSAFKSYATNCVNIKGAVRNLTSKQLVYSEFGDPLHVVKYREC 241
Y+ K + + Y+ T K A C N++ + LT +Q+V+S DP V KY C
Sbjct: 151 YMAKTLFFTSLLYNSTTDHK-KGVAQYCDNVE--MSRLT-EQVVFS---DPYRVAKYNRC 203
Query: 242 QVPPLGSQEVLVR 280
P L + VR
Sbjct: 204 TSPFLDNDAAAVR 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,081
Number of Sequences: 37544
Number of extensions: 305659
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -