Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25n02
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.86 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 424 RTYSTDFFTYLFNNSNSFISRHTR 353
           R   TD+   L +NS SF+S H+R
Sbjct: 110 RELQTDYDRRLHDNSPSFLSDHSR 133


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 654 MTFCPHALLAPFWITTRPSLTGLKSDSIL*AVHGFTVSVA 535
           + FC   ++ PF+    PSL+ L +D+ L  +  F V+ A
Sbjct: 46  LPFCGPNVINPFFCDMSPSLSLLCADTRLNKLAVFIVAGA 85


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 328 SLYCVYVSWINRSCQHAHQHFLAPQ 254
           SLY  Y+ ++ R  + AHQ   +P+
Sbjct: 605 SLYDEYIPFLERELRKAHQEKDSPR 629


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 297 TGAASMRTNTSWLPSGGTWHSL 232
           T A   +TN +WLP    + SL
Sbjct: 432 TSAGFSQTNKTWLPVNENYKSL 453


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 470 DIAIFNKDVLRVVPDSLGTVEAATLTVNPCTAYRMLSDFKPVKDGLV 610
           D A  + +V    P ++  ++   + +NP T YR+    +   DG++
Sbjct: 823 DTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVI 869


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 470 DIAIFNKDVLRVVPDSLGTVEAATLTVNPCTAYRMLSDFKPVKDGLV 610
           D A  + +V    P ++  ++   + +NP T YR+    +   DG++
Sbjct: 819 DTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVI 865


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 415 STDFFTYLFNNSNSFISRHTR*IYFHRILS 326
           ST+   Y+ +N N+ I        FHR+ S
Sbjct: 197 STNTMVYMVDNKNTLIIYQNADDSFHRLSS 226


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 217 ACCKVQGMPSPTAGEPR 267
           + C++ G P+ TA  P+
Sbjct: 440 SACRIHGSPATTAAPPQ 456


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 497 LRVVPDSLGTVEAATLTVNPCTAYRMLSDF 586
           L++ PD    ++ A  T+ P +A +  +DF
Sbjct: 652 LKLPPDGRTEIDVAIKTLKPGSADKARNDF 681


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,502
Number of Sequences: 438
Number of extensions: 3687
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)