Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m24
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 29  LSQLENDKIFS*YK*NSTYYIEYKLTFTRKYEERSANSNMLNDI 160
           LS + N+  +S    +S YY+  +     +YEE +     + DI
Sbjct: 259 LSPVTNNLYYSPLTSHSLYYVNMEPFMKSQYEENNIEYEGIQDI 302


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 DISRR*NKLIMEIFNENVSL*VPMSGHEVSVS 250
           D+SRR + LI +++  N S+        VSV+
Sbjct: 376 DVSRRRSSLICDVYGVNESVSYERGSMTVSVT 407


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 327 LASAGRNGGPMTVFQVPLSGD*SIQNGHCATKAGDS 434
           L  AG+NG  +T  +V    D  +  GH  T +G S
Sbjct: 323 LIEAGQNGVLLTDKEVKEQVDTIMFEGHDTTASGSS 358


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 510 ILCLSICKNRRLGSKRSFSGSKL 442
           I+C   CK R    +R   GS+L
Sbjct: 76  IICKCFCKRRTNTLRRGSDGSQL 98


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 510 ILCLSICKNRRLGSKRSFSGSKL 442
           I+C   CK R    +R   GS+L
Sbjct: 524 IICKCFCKRRTNTLRRGSDGSQL 546


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 567 VSFSTVKITECPVLLINPFILCLSICKNRRLGSKRSFSGSKLTGD 433
           +S +TV+  E       P    LS C NR + +   F  + L+GD
Sbjct: 689 LSAATVRFIEAEP---QPIGKALSKCHNRNVTTCNMFRKTNLSGD 730


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,708
Number of Sequences: 438
Number of extensions: 5186
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)