Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m20
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920           69   4e-12
03_01_0436 + 3384526-3385236,3387857-3388720                           31   0.65 
11_06_0238 - 21614535-21615347,21616759-21617352                       29   4.6  
07_01_0130 - 963856-965454                                             28   8.0  

>05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920
          Length = 139

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 35/54 (64%), Positives = 37/54 (68%)
 Frame = +3

Query: 387 RTMFIQTQDTPNPNSLKFLPGTKVLEPGQTLDFPNIGAAHCSPLAKMLFRIDGV 548
           R MFIQTQ TPNP SL F PG  V+E G + DFPN   A  SPLAK LF IDGV
Sbjct: 23  RGMFIQTQSTPNPQSLMFYPGKPVMEVGSS-DFPNARTAMTSPLAKALFAIDGV 75



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +1

Query: 556 VFFGPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDA 687
           VFFG +F+TVTK ++   W  LKPE+F  IMDF++SG  +  D+
Sbjct: 78  VFFGSDFVTVTKSEE-TSWDYLKPEVFAVIMDFYSSGQSLFLDS 120


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 492 IGAAHCSPLAKMLFRIDGVKSSLLWTRIHYCNKTGR 599
           + A H  P    L+R     SS LW  + YC   GR
Sbjct: 408 LSAWHMEPSRMTLYRFGNTSSSSLWYELSYCEAKGR 443


>11_06_0238 - 21614535-21615347,21616759-21617352
          Length = 468

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 492 IGAAHCSPLAKMLFRIDGVKSSLLWTRIHYCNKTGR 599
           +GA H  P    L+R     SS LW  + Y    GR
Sbjct: 367 LGAWHMEPSRMTLYRWGNTSSSSLWYELAYAEAKGR 402


>07_01_0130 - 963856-965454
          Length = 532

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 277 VYYSHQLYKGRQESTMDYQVF*SL---TFHKRVQLFLHASVPCSYKLK 411
           VY+ H+LYK      MD  +  SL   TF++   L LHA     + L+
Sbjct: 376 VYFDHELYKNFTGPFMDLNIMASLIQATFYEGNWLSLHAHTRSYFLLR 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,406
Number of Sequences: 37544
Number of extensions: 296288
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)