Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m13
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0949 + 33010024-33010410                                         29   1.5  
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    27   4.6  
10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78...    27   6.1  
10_01_0254 - 2677811-2677911,2678132-2678313,2678646-2678694,268...    26   8.1  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    26   8.1  

>02_05_0949 + 33010024-33010410
          Length = 128

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 170 GDCGGVIIIF*AIRSLTDRWSRALYQRDMR 259
           G  GG   +F A R L  RW  ALY+R +R
Sbjct: 54  GGAGGRRRLFGAFRRLRVRWLAALYRRSLR 83


>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 356  STHLLNTN*IIFYYFNYPG*LPSHSLHKDYQ*ASY-PSGTTHD 231
            ST L+  N +IFY F     L  H+L KD +   + P  TT+D
Sbjct: 949  STELILYNILIFYLFRRRHILQVHNLLKDMKSNGFSPDTTTYD 991


>10_01_0055 -
           785172-785997,786859-787394,787478-787695,787789-787891,
           788723-788770
          Length = 576

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 ILPTVAIITASIGLPGW 171
           +L  VA+IT S G PGW
Sbjct: 519 VLGAVAVITTSSGAPGW 535


>10_01_0254 -
           2677811-2677911,2678132-2678313,2678646-2678694,
           2680659-2680755,2681119-2681436
          Length = 248

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = +1

Query: 166 GWGLWWCHN--YFLGNTL 213
           G G+WW HN   + GNTL
Sbjct: 144 GHGMWWVHNPDRYYGNTL 161


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 265  SKPHIPLVQRTTPSISKRAYCLENNYDTTT 176
            S  H+P V ++TP+      CL+N+ D  T
Sbjct: 3633 SSSHLPDVLQSTPNQRAEQECLDNSDDVNT 3662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,708,951
Number of Sequences: 37544
Number of extensions: 150279
Number of successful extensions: 286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)