Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m13
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023845-4|CAA19541.1|  516|Caenorhabditis elegans Hypothetical ...    31   0.19 
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    26   9.7  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    26   9.7  

>AL023845-4|CAA19541.1|  516|Caenorhabditis elegans Hypothetical
           protein Y51B9A.6 protein.
          Length = 516

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 156 WIAGLGTVVVS*LFSRQYARLLIDGVVRCTRGI*GLLVIL 275
           WIA +G  +VS  FS  YA + + GV+ CT    GLL ++
Sbjct: 291 WIAVIGNFLVS-QFSISYAPIYLRGVIGCTPTEAGLLTLI 329


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 130 TVAIITASIG--LPGWGLWWCHNYFL 201
           T+  + ++IG  L GW +W+  N+FL
Sbjct: 519 TICFLFSAIGINLYGWYIWYTENHFL 544


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 130 TVAIITASIG--LPGWGLWWCHNYFL 201
           T+  + ++IG  L GW +W+  N+FL
Sbjct: 519 TICFLFSAIGINLYGWYIWYTENHFL 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,867,336
Number of Sequences: 27780
Number of extensions: 145972
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)