Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m12
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   2.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   2.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    24   3.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    23   8.8  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    23   8.8  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    23   8.8  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    23   8.8  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    23   8.8  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    23   8.8  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -1

Query: 206 FANINKIQYTDSQNYTTFATNTEHISRTL*H*QHNLISRVRLVSIGFDIPTVMTDRYSSF 27
           F NI     TDS   TT     +H   T+ H  H+L  R ++ S   DI      RY   
Sbjct: 337 FDNIEWTLPTDSP--TTAPRIAKHTYETIYHQWHSLRIREQIASFMLDIADHNVKRYGKS 394

Query: 26  VKGSN 12
            + S+
Sbjct: 395 EESSS 399


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -2

Query: 232 RVLQQMSSNLQILTRYNTQ----IHKIILLLPLTQNIFLGHYNINNI 104
           ++L++++ NLQI T Y TQ    +   I +L ++++ +  H++ + I
Sbjct: 587 KLLKKVNRNLQIKTNYPTQEFHLLRPTIKILQISKHEYFLHFSSSYI 633


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 211  SNLQILTRYNTQIHKIILLLPLTQNIFLGHYNI 113
            SNLQ+   ++T  + +I   P T+N+++  YN+
Sbjct: 1074 SNLQLF--FSTDTY-VIFFEPNTENVYINSYNL 1103


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 201 KY*QDTIHRFTKLYYFCH*HRTYF*DIITLT 109
           KY Q+ +   + ++ FC   R +  DI+ LT
Sbjct: 439 KYLQEDVEGVSAVHSFCGNFRRFMFDIVRLT 469


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 178 VYCILLIFAN*KTSAAKPYLGNFITKENI 264
           ++CIL++FA  K    K +L  +I +  I
Sbjct: 83  IWCILIVFAIDKNFEVKDFLSIWINESFI 111


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 261 ILFGNEVSKI 232
           ILFGNE+SKI
Sbjct: 88  ILFGNEISKI 97


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 178 VYCILLIFAN*KTSAAKPYLGNFITKENI 264
           ++CIL++FA  K    K +L  +I +  I
Sbjct: 103 IWCILIVFAIDKNFEVKDFLSIWINESFI 131


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 178 VYCILLIFAN*KTSAAKPYLGNFITKENI 264
           ++CIL++FA  K    K +L  +I +  I
Sbjct: 83  IWCILIVFAIDKNFEVKDFLSIWINESFI 111


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 178 VYCILLIFAN*KTSAAKPYLGNFITKENI 264
           ++CIL++FA  K    K +L  +I +  I
Sbjct: 83  IWCILIVFAIDKNFEVKDFLSIWINESFI 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,091,254
Number of Sequences: 5004
Number of extensions: 19522
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)