Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m12
         (287 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017     27   3.2  
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436...    26   4.2  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    26   4.2  
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           25   7.4  
08_01_0481 + 4229084-4229262,4231083-4231148,4233138-4233255,423...    25   9.8  
01_06_0814 - 32171148-32171303,32171383-32171423,32171645-321716...    25   9.8  

>03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017
          Length = 756

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 285 FFLKHINYILFGNEV 241
           FF KH N+ +FGNE+
Sbjct: 434 FFTKHFNWAVFGNEL 448


>01_06_1153 -
           34942608-34942975,34943082-34943330,34943516-34943625,
           34944698-34944771,34945237-34945306,34945848-34945947,
           34946045-34946120,34946572-34946646,34947067-34947156,
           34947238-34947354,34947457-34947567,34947649-34947788,
           34947962-34948043,34948224-34948303,34948938-34949046,
           34949295-34949417,34949972-34950044,34950338-34950489,
           34951029-34951127,34952258-34952383
          Length = 807

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 177 CVLYLVNICKLEDICCKTLSWKLH 248
           C L   N+C    +  +TL WKLH
Sbjct: 148 CKLVHGNVCVTSVVVTQTLDWKLH 171


>01_03_0014 + 11655216-11655287,11657833-11658048,11659848-11661912,
            11662966-11663013,11663081-11663328,11663429-11663558,
            11663707-11663983,11664102-11664180,11664311-11664397,
            11664586-11664618
          Length = 1084

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 279  LKHINYILFGNEVSKIG 229
            +K  N +LFGN+V+KIG
Sbjct: 972  IKSSNILLFGNDVAKIG 988


>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 180 VLYLVNICKLEDICCK 227
           VLYL+ + KL+ +CC+
Sbjct: 810 VLYLIKLDKLQSLCCE 825


>08_01_0481 +
           4229084-4229262,4231083-4231148,4233138-4233255,
           4233620-4233711,4233805-4233883,4233959-4234052,
           4234296-4234408,4234811-4234856,4235364-4235404,
           4235492-4235647
          Length = 327

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 186 YLVNICKLEDICCKTLSW 239
           Y   IC ++ +CC++ SW
Sbjct: 211 YRAVICGMDHVCCESKSW 228


>01_06_0814 -
           32171148-32171303,32171383-32171423,32171645-32171690,
           32172100-32172212,32172459-32172552,32172628-32172706,
           32172808-32172899,32172973-32173032,32173263-32173409
          Length = 275

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 186 YLVNICKLEDICCKTLSW 239
           Y   IC ++ +CC++ SW
Sbjct: 159 YRAVICGMDPVCCESKSW 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,300,863
Number of Sequences: 37544
Number of extensions: 104276
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)