Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m12
         (287 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   0.57 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.0  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   3.0  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   3.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   7.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   7.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 0.57
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 198 ICKLEDICCKTLSWKLHYQR 257
           +C   D+C KTLS KL  +R
Sbjct: 370 VCYTCDVCGKTLSTKLTLKR 389


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 175 SVYCILLIFAN*KTSAAKPYLGNFITKENIIDMF 276
           +V+ +LL      TS   P LG F+    I+D F
Sbjct: 283 TVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTF 316


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 178 QIHKIILLLPLTQNIFLGHYNIN 110
           Q +K I L  LT+N+ + +YNI+
Sbjct: 88  QEYKNIKLYGLTKNLEIKNYNID 110


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 279 LKHINYILFGNEVSKIGFCSRC 214
           L+H+N+ + G  V+ +   SRC
Sbjct: 393 LEHVNFQILGANVNDLIRNSRC 414


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 283 FFKTYQLYSLW**SFQDRVLQQMSSN 206
           FFK Y  Y  +  +F D  L ++ +N
Sbjct: 54  FFKKYPEYQRYFTAFMDTPLNELPAN 79


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 283 FFKTYQLYSLW**SFQDRVLQQMSSN 206
           FFK Y  Y  +  +F D  L ++ +N
Sbjct: 54  FFKKYPEYQRYFTAFMDTPLNELPAN 79


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = -2

Query: 157 LLPLTQNIF---LGHYNINNI 104
           L PLTQN++   L  +N+N +
Sbjct: 256 LSPLTQNLYYSALSSHNLNYV 276


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 197 INKIQYTDSQNYTTFATNTEHISRT 123
           + K+Q   + NYT  A   + + +T
Sbjct: 369 LTKVQLIHAGNYTCHAVRNQDVVQT 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,939
Number of Sequences: 438
Number of extensions: 1391
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)