Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m11
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   1.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   1.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   3.0  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   4.0  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   4.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   7.0  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    23   9.2  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.2  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    23   9.2  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 137 TGWQLGNDCDPSAS*FYDSSKATVTME 217
           TG QL +D D   S   DSSKAT+T++
Sbjct: 143 TGRQLFDDDDFDESDAEDSSKATITLD 169


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 206  QLLLKNHKITKRRDHSHYQAAILLSRRLGLASFASQT 96
            QLLL+    +++R     QAA   SRRL ++ FA +T
Sbjct: 930  QLLLRGELASEKRLRVWSQAANDASRRLVISKFAQET 966


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
 Frame = +3

Query: 48   IGTFYYGKGH-------YPGAPSCLGREGC 116
            IG FYYG+GH          A SCL   GC
Sbjct: 1309 IGEFYYGRGHKFLAKSYITRALSCLKNIGC 1338


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 129 AAGSCILRVPNMRVRPDNVLYHNKKYLCVNPSYEQS 22
           + G C+  +    +R  +VLY  ++ +C++ S ++S
Sbjct: 535 STGECLYHLRGHSLRIYSVLYEPERNICISGSMDKS 570


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -3

Query: 183 NYEAEGSQSLPSCHPVVKAAGSCILRVPNMRVRPDNVLYHNKKYLCVNPSYEQSKFYSN 7
           N++  GS  L S + V      C    P+    P     HN K+ C N  Y  S   SN
Sbjct: 45  NWKCLGSDKLISFNQVNDDYCDC----PDGSDEPGTSACHNGKFFCKNTGYISSYIPSN 99


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 185 YDSSKATVTMERFIKSLDYEKEDNERFNFYSD 280
           YDS    + +E+F +   YE   ++ F  Y D
Sbjct: 668 YDSPDVNLLIEQFYEITSYESNYDDAFVEYKD 699


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 182 FYDSSKATVTMERFIKSLDYEKEDNERFNFYS 277
           +YD+   T  +    + L  EKE NE++NF S
Sbjct: 497 YYDNITFTPFVNLDDELLLIEKEKNEKYNFTS 528


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 236 DYEKEDNERFNFYSDFF 286
           D    DNE  +FYS+FF
Sbjct: 207 DLSHSDNETGHFYSNFF 223


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 90  VRPDNVLYHNKKYLCV 43
           ++PDN+L+     LCV
Sbjct: 201 IKPDNILFKENNNLCV 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,247
Number of Sequences: 5004
Number of extensions: 26530
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)