Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25m11
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 35 0.014
01_01_1125 - 8920590-8924372 29 1.2
02_02_0060 + 6446317-6446871,6447836-6448276,6449035-6449265,644... 27 4.9
02_02_0058 - 6423776-6423850,6424302-6424379,6426096-6426156,642... 27 4.9
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741 26 6.4
06_03_0651 - 23164377-23165969 26 6.4
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 26 6.4
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 26 8.5
01_02_0011 + 10146944-10147067,10147871-10148025,10148137-101483... 26 8.5
01_02_0010 + 10142450-10142570,10142811-10142965,10143295-101434... 26 8.5
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 48 IGTFYYGKGH--YPGAPSCLGREGCKTQPP*QQDGSLVMTVIPPL 176
+GT YYG G P PSC E C+ + DGS M IP L
Sbjct: 263 VGTLYYGNGDPTTPLWPSCAAGEDCERLSQGELDGSAAMPSIPAL 307
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 135 VKAAGSCILRVPNMRVRPDNVLYH 64
V A S LR+P MR+RP+ V YH
Sbjct: 630 VDDACSLFLRMPEMRLRPNIVTYH 653
>02_02_0060 +
6446317-6446871,6447836-6448276,6449035-6449265,
6449382-6449473,6449555-6449615,6451541-6451618,
6451853-6452014
Length = 539
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 6 DLNKISIVHSLD*HIGTFYYGKGH 77
D K + + D +G +YYG+GH
Sbjct: 20 DAQKRRVCYFYDPEVGNYYYGQGH 43
>02_02_0058 -
6423776-6423850,6424302-6424379,6426096-6426156,
6426239-6426330,6426440-6426670,6427510-6427950,
6429037-6429591
Length = 510
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 6 DLNKISIVHSLD*HIGTFYYGKGH 77
D K + + D +G +YYG+GH
Sbjct: 20 DAQKRRVCYFYDPEVGNYYYGQGH 43
>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
Length = 375
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 91 PHVWDAKDARPSRLDN 138
PH+W A D+ P +DN
Sbjct: 147 PHIWSAIDSMPCSMDN 162
>06_03_0651 - 23164377-23165969
Length = 530
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 KLRSGGITVITKLPSCCQGGWV 119
K++ G+T I L +CC GG V
Sbjct: 377 KVKPDGVTFIGVLSACCHGGLV 398
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 200 LLKNHKITKRRDHSHYQA 147
LL+N ++T+RR+H H Q+
Sbjct: 385 LLRNQRLTQRRNHRHGQS 402
>02_01_0590 +
4376785-4377009,4378153-4378407,4378514-4378641,
4378738-4378779,4378875-4378956,4379035-4379103,
4379180-4379350,4379430-4379495,4379777-4379845,
4379928-4380056,4380845-4380881,4380906-4380997,
4381541-4381602,4381855-4381918
Length = 496
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 224 IKSLDYEKEDNERFNFYS 277
++S DY K +NE++ F+S
Sbjct: 400 VQSRDYSKNENEKYKFWS 417
>01_02_0011 +
10146944-10147067,10147871-10148025,10148137-10148319,
10149448-10149800,10150036-10150207
Length = 328
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 34 AWINT*VLFIMVKDIIRAHPHVWDAKDAR 120
A+ N ++ V+D+ RAH V++ DAR
Sbjct: 213 AYPNAVAAYVDVRDVARAHALVYEHPDAR 241
>01_02_0010 +
10142450-10142570,10142811-10142965,10143295-10143477,
10143691-10144043,10144220-10144388
Length = 326
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 34 AWINT*VLFIMVKDIIRAHPHVWDAKDAR 120
A+ N ++ V+D+ RAH V++ DAR
Sbjct: 212 AYPNAVAAYVDVRDVARAHALVYEHPDAR 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,638,654
Number of Sequences: 37544
Number of extensions: 176228
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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