Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m11
         (332 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043595-1|AAH43595.1|  541|Homo sapiens RFT1 homolog (S. cerevi...    29   4.5  
BC006846-1|AAH06846.1|  197|Homo sapiens RFT1 protein protein.         29   4.5  
AJ318099-1|CAC69544.1|  541|Homo sapiens putative endoplasmic re...    29   4.5  
AK131573-1|BAD18705.1|  140|Homo sapiens protein ( Homo sapiens ...    28   6.0  

>BC043595-1|AAH43595.1|  541|Homo sapiens RFT1 homolog (S.
           cerevisiae) protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 175 SGGITVITKLPSCCQGGWVLHPSRPKH 95
           SGG+T ++++  CC+ GW   P+R  H
Sbjct: 478 SGGVTAVSEVFLCCEQGW---PARLAH 501


>BC006846-1|AAH06846.1|  197|Homo sapiens RFT1 protein protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 175 SGGITVITKLPSCCQGGWVLHPSRPKH 95
           SGG+T ++++  CC+ GW   P+R  H
Sbjct: 134 SGGVTAVSEVFLCCEQGW---PARLAH 157


>AJ318099-1|CAC69544.1|  541|Homo sapiens putative endoplasmic
           reticulum multispan transmembrane protein protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 175 SGGITVITKLPSCCQGGWVLHPSRPKH 95
           SGG+T ++++  CC+ GW   P+R  H
Sbjct: 478 SGGVTAVSEVFLCCEQGW---PARLAH 501


>AK131573-1|BAD18705.1|  140|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16831 fis, clone TESTI2046536. ).
          Length = 140

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 154 TKLPSCCQGGWVLHPSRPKHEGAP 83
           TKLP      W L  SRPKH+  P
Sbjct: 117 TKLPGPLTPSWKLRKSRPKHQVRP 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,566,498
Number of Sequences: 237096
Number of extensions: 985981
Number of successful extensions: 1966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)