Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25m11
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    28   0.034
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              20   9.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   9.1  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           20   9.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.034
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 126 AGSCILRVPNMRV-RPDNVLYHN 61
           AG  ++RVP  RV RPD +LY+N
Sbjct: 75  AGIRVIRVPYNRVWRPDTILYNN 97


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 120 SCILRVPNMRVRPDNVLYHNKKYLCVNPSYEQSK 19
           S  +R P   +   N+L +  +Y  + P Y QS+
Sbjct: 412 STSMRDPAFYMLYQNILSYFLRYKKLQPQYSQSE 445


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   LNKISIVHSLD*HIGTFY 62
           L KIS V S+D ++GT +
Sbjct: 274 LPKISYVKSIDVYLGTCF 291


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   LNKISIVHSLD*HIGTFY 62
           L KIS V S+D ++GT +
Sbjct: 274 LPKISYVKSIDVYLGTCF 291


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   LNKISIVHSLD*HIGTFY 62
           L KIS V S+D ++GT +
Sbjct: 213 LPKISYVKSIDVYLGTCF 230


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 197 KATVTMERFIKSLDYEKEDNER 262
           +A V + R   S+D +KED+ R
Sbjct: 27  RAVVPICRIETSIDQQKEDDFR 48


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 66  HNKKYLCVNPSYEQSKFYSN 7
           +N KY   N +Y +  +Y N
Sbjct: 100 YNNKYNYNNNNYNKKLYYKN 119


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -3

Query: 177 EAEGSQSLPSCHPVVKAAGSC 115
           +   S    +CH + KA G C
Sbjct: 29  QVNDSACAANCHSLGKAGGHC 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,680
Number of Sequences: 438
Number of extensions: 1756
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)