Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25m05
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 76 6e-15
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 34 0.023
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.66
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.1
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.5
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 2.0
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 27 2.6
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 4.6
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 4.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 4.6
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.1
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 8.1
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 8.1
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 75.8 bits (178), Expect = 6e-15
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Frame = +3
Query: 288 KNRPREISSKKPVPVV-QVAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIK 464
K+ P+E+SSKKPV +V KK RDPRFD L G K + +NYGFL+E R+ +I+
Sbjct: 14 KHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVKKNYGFLNEYRVSEIQ 73
Query: 465 AARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLDREVAQKNRDDIEKQFREGKQPH 644
R EL+ D E+ + + + V + R +++ +EGK+P
Sbjct: 74 QLRDELKICKDQERAESIRQTLKSLLSKMERHLEEERAERVMHEFRAQEKERVKEGKKPF 133
Query: 645 FKNKSELRVEALVKQYESLK 704
+ ++E + + +Y+S++
Sbjct: 134 YLKRNEQKKLIQMDKYKSME 153
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 120 EIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEA 230
E+++ ER S + ELA L E LQ L+EK+GA V+ A
Sbjct: 2396 ELQEAERKS-QQELADLVTESLQVLQEKVGATVFARA 2431
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.1 bits (62), Expect = 0.66
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Frame = +3
Query: 240 TKEKVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEFDKKQFS 419
+K K NVP K+FK+ K IS K+ ++ KK V + + G++D S
Sbjct: 23 SKNKENVPGKLFKK-FKCPSLVISEKRK----ELPLRKKPRVNYSEYGSVDGKYDSAYVS 77
Query: 420 QNYGFLSELRMKDIKAARQELRE-TTDPEKQIKXXXXXXXXNDQHKAC 560
+N L+ ++ + E R+ +T +KQ D K C
Sbjct: 78 ENVSGLATIKEANRLILNHERRDPSTVIKKQFSVPKPIKGHEDISKLC 125
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +3
Query: 117 DEIEDNERTSIRSELASLSFEELQQLKE--KIGAKVYKEALFGTKEKVNVPPKVFKRENK 290
+ I E ++ E E+ ++L+E KI AK KE KE++ + + +R +
Sbjct: 88 ERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQ--QRRKE 145
Query: 291 NRPREISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAA 470
R +++ K+ ++ + KE + + + + +K+ + N F+++ + ++
Sbjct: 146 ERDQKLREKEEAQRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVAD-KTDELNEF 204
Query: 471 RQELR 485
+E R
Sbjct: 205 EKEFR 209
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 54 DLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKE 227
D I+Y LLK + + ++E+E +E +R L L LQ K I ++ K+
Sbjct: 347 DTIRYYLLKRGRLTSDSNFDIEELEKDEEHDLRRSLGVL-LSRLQSKKLFISNEIQKQ 403
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 84 SCSEDNEDSHVD-EIEDNERTSIRSELASLSFEELQQLKEK 203
S EDN D E +D+ + S L FEEL+ L+EK
Sbjct: 38 SVDEDNTSVFEDVEAQDSRQKRFSSTLEGNRFEELRSLREK 78
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 54 DLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKE 227
DLI +L +M D + ++V D+E + + L LS E + K+ + KE
Sbjct: 237 DLIAQMLKQMLDQSDKDRAYVKIEGDDEVVLLMNNLGGLSMLEFSAISHKVKEALAKE 294
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 117 DEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENKNR 296
DE+ E S+ AS S+E+L K E+LF + + V KR++KN
Sbjct: 130 DELLATEPISLSINPASTSYEKLTVSSPNSFLKNQDESLFLSSSPITVSQGT-KRKSKNS 188
Query: 297 PREISSKK 320
+ KK
Sbjct: 189 NSTVKKKK 196
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 348 VKKKEVRDPRFDPLCGEFDKKQFSQNYGFLS-ELRMKDIKAARQELRETTDP 500
V+KKE+++ +F+ E K+ + NY +S + K + + +E + +P
Sbjct: 220 VQKKEMKEKKFEKQLLELRKRTRTSNYSRMSIREKRKHVHSYDEEFEKPNEP 271
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 111 HVDEIEDNERTSIRSELASLSFEELQ 188
HV++ ED RT ++S+ A +S E+Q
Sbjct: 93 HVEDKEDLNRTVVKSQEAIVSIPEIQ 118
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 579 CPTC-FFCMLYADHSIFAIIYVILFVSL 499
C C FC+L+ + S+F I Y LF +L
Sbjct: 511 CEVCNSFCLLFDERSLFKIPYHELFCAL 538
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 664 SSDLFLKCGCLPSRNCFSIS----SLFFCATSLSNLFLLHALC*SFNLCNNL 521
S + ++ C L +RN S S FF + SN++ + LC + NN+
Sbjct: 98 SMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYSIFQLCGCLLMFNNI 149
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 210 AKVYKEALFGTKEKVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDPRFDPL 389
A+ Y++ G K V P F+R+ + E S ++ VP+V+ + V+K+E + +
Sbjct: 8 ARAYRQRKVGIK---TVMPIYFERDIPDFDEEASLQRTVPLVE-SGVEKEEEEEKHLQQV 63
Query: 390 CGE 398
E
Sbjct: 64 INE 66
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 93 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKV 272
E DSHVD IED + + + + E L+ L + ++ L +++V K
Sbjct: 21 ETEYDSHVDSIEDIHSLASKRKKLNEKKENLEDL-TLLKTSAFELKLNELIREISVRGKY 79
Query: 273 FKRENK--NRPREISSKKPV 326
F+ N + +++ K PV
Sbjct: 80 FRHANTFVEKIKDLIFKTPV 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,346
Number of Sequences: 5004
Number of extensions: 49133
Number of successful extensions: 220
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -