Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l24
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    95   9e-21
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    29   0.90 
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    28   1.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   4.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.4  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   8.4  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 8/205 (3%)
 Frame = +3

Query: 3   IVIGPGLGREDETMKLTYDIIESCKVLEKPIVIDADGLYAISKNISIIQDYPKAGAILTP 182
           IVIGPGLGR++   ++   +IE  +  + P+VIDADGL+ I +   ++  Y     ILTP
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADGLWLIQQRPELVSGY--HNVILTP 173

Query: 183 NGRESKKLME--SINSNGSNWFNYWGE--NVSVLEKGETDKFHSRVPSYNWAXXXXXXXX 350
           N  E K+L +   I S+G +  N      N+ +++KG++D       +Y  A        
Sbjct: 174 NVIEFKRLCDKLDIKSDGPDACNQLAGKLNLLIIQKGQSDIISDGATAY--ACSVPGGLK 231

Query: 351 XXXXXXDFLSGSLATFYHWA---LTSD-VCQGEQHGQISQSLASYAAARLVRTCNSQAFE 518
                 D L+G LATF  W    L+ +   +G    +    LA++ A+   R C+  AF+
Sbjct: 232 RCGGQGDILTGILATFLAWRHAYLSKEWDTEGNMDAKECLFLAAFGASACTRWCSRLAFK 291

Query: 519 KYGRSMMASDMIKEIHSAYKKVFED 593
           + GR+  ++D+++ +  AY  + ED
Sbjct: 292 ECGRATQSTDLVRHVGKAYNALMED 316


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 463 KLCEICPCCSPWH 425
           K C+ C CC+PW+
Sbjct: 21  KFCQFCLCCNPWY 33


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 252 PNS*TN*IHS--NLSIPSTSSIRVRSVSKWRLPLDNP 148
           P   +N IH+  NL++ S S +  RS + +  PLDNP
Sbjct: 231 PTVSSNHIHASGNLALGSNSGLNPRSPNSFSSPLDNP 267


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 289 INFIQEYHRTTGLRPKVARRDALVVKETSYQARWLHFIIGR*QAMCAKANNTDKFHKA 462
           I+  Q+  +TT L  +V R + +  K +S+   +    + R QA      NTD FHK+
Sbjct: 269 ISTSQQKPKTTALDYEVFRHE-MATKFSSFADSYYPVPLDREQAHILPTLNTDSFHKS 325


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 369 LLDHQRVSPSHLRTKPSCTMVLLNEIYQFRLFLKPKRFPPNS 244
           L+D  R S +++   P C   LLN IY F   L+P    PN+
Sbjct: 493 LVDSARYSTANV--PPLCLDALLNFIYYFHEHLQPCYNDPNN 532


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -1

Query: 269  NRNVFPPIVEPIRSIRIYRFHQLLRFASVRCQNGACLWIILNNGYVF*NSV*AIGVDDYG 90
            +R + PPI   IR  ++ R   +LR+A++        +++L   +VF  S     +D + 
Sbjct: 1654 SRQIRPPIYT-IRQNKLRR-QIVLRYATLYFSLFIAFFVLLILPFVFGKSAAGTSMDKFN 1711

Query: 89   LLQYFTAFYY 60
            L+Q  T   Y
Sbjct: 1712 LIQPATKIVY 1721


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 192 ESKKLMESINSNGSNWFNYWGENVSVLEKGETDKFHSRVPSY 317
           E+K+LM +   + S+W NY+ E +++   GE+   +  +  Y
Sbjct: 22  ETKELMLNNEESLSDWRNYFDEKLTI--PGESGALNGTINGY 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,381
Number of Sequences: 5004
Number of extensions: 63486
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)