Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l23
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1190 + 10231166-10231222,10231318-10234122                       28   5.8  
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    28   5.8  

>06_01_1190 + 10231166-10231222,10231318-10234122
          Length = 953

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 527 MRKLTPTTSTNAQEVCRLLYILIKKKS 607
           +RKL  TT+ + +E C++LY  I+K S
Sbjct: 673 LRKLGVTTNGSTKEKCKILYAAIEKLS 699


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 135 IRSNRMLLFSITSFRLFSVLFFHLKPSSFIIRRKLHSEPLKF 10
           I+S  ML F I   R + V   HLK   F+    LH E  ++
Sbjct: 833 IQSCEMLFFPIFYKRHWFVFIVHLKDEMFVFLDSLHEEGFEY 874


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,360
Number of Sequences: 37544
Number of extensions: 206757
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)