Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l22
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   6.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.1  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    26   6.1  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   6.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   8.1  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   8.1  

>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 349 ITFKGKPHSAKAMHQSFKAVSSSLVSTKSDPILRGAS 239
           +TFKG     K   ++ K++ SSL S ++DP    A+
Sbjct: 5   LTFKGDKKIQKKKKKNTKSLQSSLESAENDPFWTDAN 41


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 428 FLPWPIIYKWVRSVFLGS 375
           + PWP++ K+++S+ LGS
Sbjct: 26  YKPWPVVEKFLKSLPLGS 43


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 497 AKNMVGTESLNSTVNS--ISQAVQIYTSSSIDSKNSVRIS*NSSC*FSNYRG 646
           + ++ G++SL  T +   +S  V  YTSSS+DS ++   + +SS    ++ G
Sbjct: 653 SSSITGSQSLKETSSPAYVSSTVS-YTSSSVDSSSTYNSTGSSSSDSQSFSG 703


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 390 RPNPFVNNR----PGKKWNSFLKRNPELRESKSLSM 485
           RPN + N+R    P K W S    N +LRES+ L++
Sbjct: 52  RPNDY-NSRLCKLPSKSWVSSTVTNEKLRESRRLAL 86


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 316 AMHQSFKAVSSSLVSTKSDPILRGASGTLKC 224
           A H++ + + S L+S K  P++R  + +L C
Sbjct: 154 AFHRTHQGIISLLLSLKKKPVIRYDNNSLLC 184


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 585 ILKIASESVEILHVSFPIIGDCTLDNNFIN 674
           ++    E+V  + +SFP+I   TLD NF++
Sbjct: 146 VIVFGIETVRSMVLSFPLIILSTLDENFLS 175


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 206 PSWYAKNSTSFSNLHPVSDRGHSL*QLLFFVLVDWSFRHYETQ--NLEHVSL 57
           P W      + SNL P   R  S  Q    +L DW+ + +  Q  ++ H+SL
Sbjct: 219 PGWICYVEKTHSNLIPNLSRVRSPQQACGRILKDWAVQQFSMQRNDVWHLSL 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,062
Number of Sequences: 5004
Number of extensions: 61674
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)