Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l17
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    50   2e-07
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.2  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    26   3.8  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   5.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   5.0  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   5.0  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
 Frame = +1

Query: 106 QKSHYIPCKIEQDGSANVKKYF-DPYIVENNS-QELSATFRGHPLDGTQITFPEGYRA-V 276
           +K+  +PC I  DG A V +YF D   + NN+  + +   RG  L+G ++  PE Y   V
Sbjct: 19  EKASLLPCHISYDGPAPVFEYFHDKIQISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 78

Query: 277 LVTETKRPLTEDAERKFQ-----VTGGFKNFTYWNWDKKPSKNDDLCK--AMDWIEIAEA 435
           ++ +      E +E++       +   F+    WN D   S   D  K   ++WI+ A  
Sbjct: 79  VLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQFASK 138

Query: 436 I 438
           +
Sbjct: 139 V 139


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +1

Query: 34  IXLIKMSILVENNLIKNENEDIFEQKSHYIPCKIEQDGSANVKKYFDPYIVENNSQELSA 213
           I L ++  ++E +L+KN   D F   ++ +    E     +  KY+  Y+  +    + A
Sbjct: 194 ISLKELLYIIEESLLKNAIPDPFSVSTYTLKSAFEHLVKKDFLKYYTAYLASSAVDYIDA 253

Query: 214 TF 219
            F
Sbjct: 254 YF 255


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 484 FNRKKSNKRTLVNRHVSLPQSRSS 413
           F+  + N + LVN+ +SLP+ R+S
Sbjct: 41  FSLSRDNVQQLVNKMISLPKERTS 64


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 40  LIKMSILVENNLIKNENEDIFEQKSHYIPCKI--EQDGSANV 159
           +I M + V   ++KN ++  F +  H IPC +  E+  S N+
Sbjct: 33  IISMGVYVPLIVMKNAHDHGFLRTDHTIPCSLYPEEPCSLNI 74


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 458 NTRQSPCIASAISIQSMALHKSS 390
           N RQ  C++S  S  S+AL KSS
Sbjct: 434 NERQRQCLSSCSSHLSLALQKSS 456


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 58  LVENNLIKNENEDIFEQKSHYIP 126
           L ENN++ N  +D  +++S +IP
Sbjct: 205 LFENNVLDNVKDDSMQRQSSFIP 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,905
Number of Sequences: 5004
Number of extensions: 34959
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)