Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l17
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0514 - 3718795-3718860,3719349-3719524,3719785-3719877,371...    69   3e-12
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    29   1.7  
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873...    27   6.7  

>02_01_0514 -
           3718795-3718860,3719349-3719524,3719785-3719877,
           3719961-3720111
          Length = 161

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
 Frame = +1

Query: 115 HYIPCKIEQDGSANVKKYFDPY---IVENNSQELSATFRGHPLDGTQITFPEGYRAVLVT 285
           H +PC I+Q+G+A V  YF P    +     +   A FRG  L G  I+ P+GYR  ++ 
Sbjct: 27  HLLPCGIKQNGAAAVSDYFKPKDTGVEVEGIRVEEAFFRGRKLQGATISLPDGYRGYVLE 86

Query: 286 ETK----RPLTEDAERKFQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWIEIAEAIH 441
           +          E     F+    F+N TYWN D  PS  D L +    + +A A+H
Sbjct: 87  KRSGGKDMKKLEGEVSNFKSRAEFQNITYWNHDTTPSAEDPLPRCFHLLTVANAMH 142


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 286 ETKRPLTEDAERKFQVTGGFKNFTYWNWDKKPSKNDDLCK 405
           E + PL   A+R+F    G K+F   +WD K S   D  +
Sbjct: 477 EVETPLDVPAKRRFAKYRGLKSFRTSSWDPKESLPQDYAR 516


>01_01_1102 -
           8734984-8736090,8736430-8736557,8736671-8736708,
           8736815-8737030,8737252-8737413,8738381-8738559,
           8738693-8738799,8738918-8739082,8739201-8739284,
           8739364-8739559
          Length = 793

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +1

Query: 109 KSHYIPCKIEQDGSANVKKYFDPYIVENNSQELSATFRGH-PLDGTQITFPEGYRAVLVT 285
           +S  I  KIE+ G  ++  +    IVE  S     TFR    LD   +T  E + + + +
Sbjct: 624 ESRDIQIKIEEKGIVDIDNWLHQQIVEKTS-----TFRSKMVLDIPGVTEAEIHVSSIPS 678

Query: 286 ETKRPLT-EDAERKFQVTG-GFKNFTYWNWDKKPSKNDD 396
            T    T ED++ K +V G   ++ T +  D K SK D+
Sbjct: 679 PTTMACTKEDSQVKDEVMGLTLQSSTDYVEDIKQSKTDN 717


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,646,847
Number of Sequences: 37544
Number of extensions: 210452
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)