Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l14
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   4.0  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   7.0  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   9.2  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = +1

Query: 490 AYQGSWIVSIMILCSALTPIPSAYLADKFGXKTTLLLGAIPFIIGWILV 636
           AYQ S  VS+          PS  L  KFG      L A+  IIGW LV
Sbjct: 78  AYQYSAAVSVFYATYITAETPSVLLVKKFGPH--YYLSAM--IIGWSLV 122


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 505 WIVSIMILCSALTPIPSAYLADKFGXKTTLLLGAIPFIIGWILVI 639
           +I S   L + L  I +  LAD FG K  + + +I  I+G I+ +
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQV 175


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 496 QGSWIVSIMILCSALTPIPSAYLADKFGXKTTLLLGAIPFIIGWILV 636
           Q   I S     + ++   S +LAD  G K  LL     F+IG +++
Sbjct: 121 QKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIM 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,423
Number of Sequences: 5004
Number of extensions: 38168
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)