Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25l12
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 3.3
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 3.3
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 27 3.3
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 4.3
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 4.3
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 5.7
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 5.7
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 9.9
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 25 9.9
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 9.9
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 9.9
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 9.9
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.9
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 9.9
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = -1
Query: 576 TSTMISCMMALSIAYKLISCTADSQGYT*YVCSRIR*LPARRSPINKKQLLAASKRSSLR 397
T + + ++ALS+AY + + S S++ P RRS N L + LR
Sbjct: 103 TDPVQAAVLALSVAYAKPTSVSLSPTDL-QAQSKLIEKPRRRSASNATGSLNKKNQDPLR 161
Query: 396 QFSVPKRATPAGRSSSARNT 337
+FS+ + A A + S N+
Sbjct: 162 RFSISESAGAAAPTPSPSNS 181
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 3.3
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 294 RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV--DLLRASATQSKQRQEYGNHEPDASV 124
RK +NV LG SDT QS+ S V + LRAS TQS E DASV
Sbjct: 285 RKLFNVFL---LGDSDTIQSVAQASLTQAVTVVYERLRASHTQSNSTSAL--PEEDASV 338
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 105 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 200
L+N P PA Y V WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/121 (18%), Positives = 53/121 (43%)
Frame = -1
Query: 378 RATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV 199
++TP R++S+RNT + R + ++ ++EL D ++R+ + V
Sbjct: 162 QSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHDLIKQITEL--QDMLDKARDQARKKSRTV 219
Query: 198 DLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKIL 19
D+L + + + + + S + + + A N+ + K+F K + +++
Sbjct: 220 DILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLN---IHKNFQKIQSELI 276
Query: 18 Q 16
Q
Sbjct: 277 Q 277
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 162 RQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKILQ 16
RQ+Y + A V+K SK + CG++++ +LV+ K +I++
Sbjct: 129 RQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIK 177
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 584 LLLAYLESCLGCTRHEYITCNENSPK 661
+ L+Y C+ + +TC ENSPK
Sbjct: 160 VFLSYATGCVNYGHNVALTCFENSPK 185
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = -1
Query: 420 ASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTT 241
A++ S++Q S + A+P + + + +A R ++ Q NV+++ + +
Sbjct: 2 ATRSVSMKQTS-QRAASPNKTQGAKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVR 60
Query: 240 QSLGARSRRSTSNVDLLRAS 181
+ A++ S+SNV L +S
Sbjct: 61 GGVAAKATDSSSNVTSLASS 80
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 420 ASKRSSLRQFSVPKRATPAGR 358
+S S R+ +P+RATPA R
Sbjct: 541 SSNSSGTRRLGLPQRATPASR 561
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -1
Query: 255 HSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGAL 76
HS+ + S G+R R S S+ D + + + + + P + S G+ + GA+
Sbjct: 94 HSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSISSSPSTIEARRRKSARGNGLNGAI 153
Query: 75 NI 70
++
Sbjct: 154 DV 155
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 216 RSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKD 46
+ST NV+ L + KQ ++ E + + Y H D+ GA+ + +KD
Sbjct: 197 QSTYNVERLISLLLSKKQPCDFVVREVLVQIVHSFYKAHLDKEEGAMQVFSLFSIKD 253
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 51 SLTMSF*CSERRKHGHHVLNNGSC 122
SLT CS RK+GH V+ C
Sbjct: 17 SLTFPMQCSALRKNGHVVIKGRPC 40
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 462 PARRSPINKKQLLAASKRSSLRQFSVPKRATPA 364
PA P N K+ + + S ++ + PK+ATPA
Sbjct: 52 PAVTDPSNAKKEINMAIESPSKKATSPKKATPA 84
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 568 YDLLYDGFVHRLQTYFLHGGFSGLHVIRLLPHPMTSS 458
+D+LYD FV R + LH + + ++P P +S
Sbjct: 561 FDILYDYFVKRNRYGVLHSKSNSVKDAYIIPMPSGNS 597
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 51 SLTMSF*CSERRKHGHHVLNNGSC 122
SLT CS RK+GH V+ C
Sbjct: 17 SLTFPMQCSALRKNGHVVIKGRPC 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,907
Number of Sequences: 5004
Number of extensions: 54636
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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