Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l08
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical ...    29   4.1  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical p...    27   9.4  

>AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical
           protein C30E1.2 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 369 CSV*IFLFPFQRAAWARKKFKKQFLYYNMGI 461
           C + ++ +  Q+  + RK FKK +++Y + I
Sbjct: 161 CQIYLYYYIIQKIRFERKSFKKSYMFYTVTI 191


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 AVCRFFFFHFNVLRGRVKNLKNNFFIIIWVL 462
           AV R+    F   R R +NL   FFI+IWV+
Sbjct: 134 AVDRYVLIIFPTKRERQQNLSFCFFIMIWVI 164


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 453 YYNKEIVF*IFYAPTQHVEMEKEKSTHCTN-FKMLTLNR 340
           Y  K I + + Y P  + +  KEK+THC   F +L L +
Sbjct: 241 YLMKIICYGLTYFPPNYGKTLKEKNTHCVRMFALLALEK 279


>Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.11 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 381 IFLFPFQRAAWARKKFKKQFLY--YNMGIIWRYTMPLLSTLAALVII 515
           IF+F +    +  K  +    Y  Y   ++W YT+P ++ L  ++++
Sbjct: 247 IFMFIYSFGIFTLKTIRSMLTYRQYYFIVVWFYTIPFIAALFPILLV 293


>Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical
           protein AH6.14 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 447 YNMGIIWRYTMPLLSTLAALVII 515
           +N+ ++W YT+P ++ L  L++I
Sbjct: 273 FNLCVVWLYTIPFIAMLLPLLLI 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,431
Number of Sequences: 27780
Number of extensions: 303643
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)